Protein Concepts Dictionary

Tableau information

Concept source:  d2pnki_  amino acid (a.a.) range (ASP282)(GLY413)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: HEHHEHEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ASP282)  (PRO292) H1
	  (ASN293)  (SER302) E2
	  (SER302)  (GLN306) H3
	  (GLN306)  (PHE316) H4
	  (ASN318)  (GLY323) E5
	  (PRO331)  (MSE344) H6
	  (PRO351)  (ARG357) E7
	  (GLN361)  (ALA387) H8
	  (GLU393)  (LEU403) H9
	  (ARG406)  (GLY413) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                    
E2     -166.9°   E2                                                             
H3      -49.4° -123.0°   H3                                                      
H4      -11.6° -167.2°  -44.2°   H4                                               
E5      141.7°  -28.2° -121.8° -151.3°   E5                                        
H6      -37.5°  143.2°   31.6°  -26.5° -153.0°   H6                                 
E7      112.5°  -71.0°  156.0°  121.1°  -60.0°  144.5°   E7                          
H8      -73.1°  103.6°  -28.6°  -64.4°  115.8°  -40.6°  174.4°   H8                   
H9      106.0°  -85.4°  145.5°  106.3°  -92.6°  113.8°  -44.3°  135.5°   H9            
H10      56.4° -136.6°   91.2°   52.9° -146.7°   60.3°  -88.2°   95.3°  -55.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2pnkc_ :   (ASP282)  (GLY413)   [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
 d2pnkk_ :   (ASP282)  (GLY413)   [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
 d2pnki_ :   (ASP282)  (GLY413)   [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
 d3hk7a_ :   (ASP282)  (GLY413)   [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
 d3hkaa_ :   (ASP282)  (GLY413)   [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1