Protein Concepts Dictionary

Tableau information

Concept source:  d1ny6l_  amino acid (a.a.) range (GLY225)(ALA333)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: HEHEEEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLY225)  (ASP231) H1
	  (GLY233)  (GLU239) E2
	  (SER244)  (GLY258) H3
	  (GLY258)  (GLY264) E4
	  (LYS267)  (ASN272) E5
	  (ARG274)  (ASN280) E6
	  (ILE283)  (GLY290) H7
	  (GLU294)  (LEU300) H8
	  (ILE303)  (PRO309) E9
	  (ARG313)  (ALA333) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                    
E2      145.6°   E2                                                             
H3      -30.1° -155.7°   H3                                                      
E4     -133.6°   64.2°  139.4°   E4                                               
E5       47.7°  -98.8°  -66.2°  140.3°   E5                                        
E6      130.6°  -15.3° -147.9°   72.2°  -84.8°   E6                                 
H7     -144.4°   69.2° -116.8°   53.9° -156.5°   84.5°   H7                          
H8       18.4° -127.6°   46.5° -133.0°  -32.3° -112.4° -162.7°   H8                   
E9      102.4°  -48.6°  130.9°  -74.7°   68.1°  -35.5°  112.2°   84.7°   E9            
H10      74.5° -107.6°   93.6°  -59.9°   96.3° -103.3° -106.5°   74.1°  -74.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1ny5b2 :   (GLY225)  (ALA333)   [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Transcriptional activator sigm54 (NtrC1), C-terminal domain |Aquifex aeolicus [TaxId: 63363]
 d1ny6b_ :   (GLY225)  (TYR332)   [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Transcriptional activator sigm54 (NtrC1), C-terminal domain |Aquifex aeolicus [TaxId: 63363]
 d1ny6c_ :   (GLY225)  (ALA333)   [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Transcriptional activator sigm54 (NtrC1), C-terminal domain |Aquifex aeolicus [TaxId: 63363]
 d1ny6l_ :   (GLY225)  (ALA333)   [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Transcriptional activator sigm54 (NtrC1), C-terminal domain |Aquifex aeolicus [TaxId: 63363]
 d1ojlb_ :   (ARG228)  (ARG316)   [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Salmonella typhimurium [TaxId: 602]
 d1ojlc_ :   (GLY227)  (ARG316)   [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Salmonella typhimurium [TaxId: 602]
 d1ny6h_ :   (GLY225)  (LYS314)   [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Transcriptional activator sigm54 (NtrC1), C-terminal domain |Aquifex aeolicus [TaxId: 63363]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.37