Protein Concepts Dictionary

Tableau information

Concept source:  d2rb5a_  amino acid (a.a.) range (VAL162)(GLY259)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: HEEHEHHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (VAL162)  (PRO167) H1
	  (THR168)  (TRP174) E2
	  (ALA177)  (ALA183) E3
	  (LYS188)  (PHE199) H4
	  (THR206)  (GLY210) E5
	  (GLY212)  (ILE216) H6
	  (ILE216)  (HIS221) H7
	  (ALA223)  (MET228) E8
	  (GLU233)  (ALA239) H9
	  (ASP249)  (GLY259) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                    
E2      129.6°   E2                                                             
E3       18.1°  147.4°   E3                                                      
H4       34.0°  -95.7°   52.0°   H4                                               
E5      156.9°   63.7° -146.5°  149.0°   E5                                        
H6      -44.7°  135.6°  -36.0°  -67.6° -143.3°   H6                                 
H7      -47.6°  -98.4°   56.0°  -41.7° -155.5°  -41.6°   H7                          
E8      154.9°   42.6°  160.4°  128.7°  -22.8° -160.3° -140.5°   E8                   
H9      -34.2° -107.3°   44.1°  -33.1° -168.8°   38.8°  -13.4° -149.8°   H9            
H10     -47.8°  106.9°  -51.8°  -50.5°  154.1°  -30.8°  -11.8°  146.9°  -17.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.4°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2b30a1 :   (ASP187)  (LEU299)   [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |PFL1270w orthologue |Plasmodium vivax [TaxId: 5855]
 d2qyhb_ :   (ARG151)  (GLN255)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 1462]
 d2rb5a_ :   (VAL162)  (GLY259)   [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Sugar-phosphate phosphatase BT4131 |Bacteroides thetaiotaomicron [TaxId: 818]
 d2b30b_ :   (SER191)  (LEU299)   [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |automated matches |Plasmodium vivax [TaxId: 5855]
 d2pq0a_ :   (ARG151)  (GLN255)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 235909]
 d4dw8a_ :   (ASP158)  (PHE267)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 818]
 d3r4ca_ :   (GLU153)  (GLY256)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 818]
 d2pq0b_ :   (ARG151)  (GLN255)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 235909]
 d2rara_ :   (VAL162)  (GLY259)   [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Sugar-phosphate phosphatase BT4131 |Bacteroides thetaiotaomicron [TaxId: 818]
 d1rkqa_ :   (GLN173)  (ASN271)   [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Hypothetical protein YidA |Escherichia coli [TaxId: 562]
 d1ymqa1 :   (VAL162)  (GLY259)   [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Sugar-phosphate phosphatase BT4131 |Bacteroides thetaiotaomicron [TaxId: 818]
 d4dwoa_ :   (ASP158)  (ILE266)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 818]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 c.108