Protein Concepts Dictionary

Tableau information

Concept source:  d1r5td_  amino acid (a.a.) range (ASP8)(LEU132)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: HEEHEEHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ASP8)   (SER25) H1
	   (ARG33)   (LEU39) E2
	   (VAL44)   (ALA54) E3
	   (ALA62)   (GLY74) H4
	   (LYS80)   (GLY86) E5
	   (ASP90)   (PRO95) E6
	   (GLY97)  (VAL107) H7
	  (PHE111)  (ASN117) E8
	  (SER121)  (THR127) E9
	  (THR127)  (LEU132) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                    
E2      146.0°   E2                                                             
E3      -26.2°  151.4°   E3                                                      
H4      111.9°  -35.6°  129.1°   H4                                               
E5      -41.7°  170.0°  -38.5°  147.4°   E5                                        
E6       87.7°  -62.5°   90.3°  -46.8°  127.2°   E6                                 
H7      136.2°  -10.8°  147.6°   24.8°  167.8°   57.4°   H7                          
E8      -55.9°  149.6°  -58.9°  139.4°  -20.8°  143.5°  148.8°   E8                   
E9      108.9°  -52.7°   99.5°  -59.4°  136.4°  -30.8°  -54.3°  156.9°   E9            
H10     -47.7° -135.2°   22.5° -130.1°   53.3°  -84.0° -137.1°   73.8°   83.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1r5td_ :     (ASP8)  (LEU132)   [view usage] : c.97.1.1 |Cytidine deaminase-like |Cytidine deaminase-like |Cytidine deaminase |mono-domain cytidine deaminase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1jtka_ :     (ASN2)  (LEU121)   [view usage] : c.97.1.1 |Cytidine deaminase-like |Cytidine deaminase-like |Cytidine deaminase |mono-domain cytidine deaminase |Bacillus subtilis [TaxId: 1423]
 d2fr6c_ :    (GLU13)  (LEU133)   [view usage] : c.97.1.1 |Cytidine deaminase-like |Cytidine deaminase-like |Cytidine deaminase |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d2fr5a_ :    (PRO12)  (LEU133)   [view usage] : c.97.1.1 |Cytidine deaminase-like |Cytidine deaminase-like |Cytidine deaminase |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d1r5tc_ :     (ASP8)  (LEU132)   [view usage] : c.97.1.1 |Cytidine deaminase-like |Cytidine deaminase-like |Cytidine deaminase |mono-domain cytidine deaminase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1zabc_ :    (GLU11)  (LEU133)   [view usage] : c.97.1.1 |Cytidine deaminase-like |Cytidine deaminase-like |Cytidine deaminase |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d3oj6c_ :     (SER7)  (PRO125)   [view usage] : c.97.1.0 |Cytidine deaminase-like |Cytidine deaminase-like |automated matches |automated matches |Fungus (Coccidioides immitis) [TaxId: 5501]
 d1r5ta_ :     (GLU7)  (LEU132)   [view usage] : c.97.1.1 |Cytidine deaminase-like |Cytidine deaminase-like |Cytidine deaminase |mono-domain cytidine deaminase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.97