Protein Concepts Dictionary

Tableau information

Concept source:  d1z41a1  amino acid (a.a.) range (THR38)(SER176)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: HEEHEEEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (THR38)   (GLN52) H1
	   (GLY54)   (VAL58) E2
	   (GLU59)   (ASN64) E3
	   (SER78)   (GLY96) H4
	   (LYS98)  (ALA104) E5
	  (GLY114)  (PRO119) E6
	  (THR130)  (SER135) E7
	  (SER135)  (GLY157) H8
	  (ASP159)  (ILE163) E9
	  (LEU170)  (SER176) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                    
E2      166.4°   E2                                                             
E3     -137.1°   36.0°   E3                                                      
H4      -27.0°  162.2° -161.7°   H4                                               
E5      136.2°  -30.6°  -43.5°  148.2°   E5                                        
E6      -44.0°  123.2°   97.1°  -70.3°  -97.0°   E6                                 
E7      -78.7°   97.8°   62.1°  -99.6°   97.3°  -57.6°   E7                          
H8      -59.0°  134.4°  132.4°  -42.0°  164.0°  -98.9°  -90.3°   H8                   
E9      116.8°  -50.9°  -61.8°  127.1°  -21.3°  -83.6° -103.8°  164.4°   E9            
H10      77.2°  -89.3°   77.7°  -98.4°   59.7°  -39.0°  -76.8° -136.1°   44.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.4°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1z41a1 :    (THR38)  (SER176)   [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |NADPH dehydrogenase NamA |Bacillus subtilis [TaxId: 1423]
 d3hf3a_ :    (ASP37)  (SER184)   [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Thermus scotoductus [TaxId: 37636]
 d3kruc_ :    (ASP37)  (SER175)   [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Thermoanaerobacter pseudethanolicus [TaxId: 340099]
 d3krua_ :    (ASP37)  (SER175)   [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Thermoanaerobacter pseudethanolicus [TaxId: 340099]
 d3krzb_ :    (ALA44)  (SER175)   [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Thermoanaerobacter pseudethanolicus [TaxId: 340099]
 d3gr7a_ :    (PRO46)  (SER176)   [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 1462]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1