Protein Concepts Dictionary

Tableau information

Concept source:  d3gcba_  amino acid (a.a.) range (GLN355)(PRO444)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: HEEEEHEHHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLN355)  (ARG361) H1
	  (HIS369)  (THR374) E2
	  (THR374)  (ASP379) E3
	  (LEU386)  (GLU391) E4
	  (GLY402)  (THR407) E5
	  (THR407)  (GLU413) H6
	  (PHE416)  (VAL420) E7
	  (ASP421)  (PRO426) H8
	  (PRO426)  (SER435) H9
	  (GLU438)  (PRO444) E10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                    
E2     -144.0°   E2                                                             
E3      151.8°  -63.9°   E3                                                      
E4      -36.4°  108.3°  165.2°   E4                                               
E5      128.8°  -84.0°  -32.2°  162.6°   E5                                        
H6      -46.7° -137.7° -120.3°   74.2°  -88.4°   H6                                 
E7     -102.2°  -46.8° -104.6°   74.6° -107.7°  -97.6°   E7                          
H8     -141.9°   73.1°   17.3° -177.5°  -15.0° -103.4°  105.3°   H8                   
H9      -23.0° -137.6°  147.7°  -46.4°  116.2°   27.9°  -90.8° -131.2°   H9            
E10      48.9°  137.2°  111.9°  -64.4°  115.1°   83.1° -137.2°  116.2°  -70.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2cb5a_ :   (ASN358)  (PRO445)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Bleomycin hydrolase |Human (Homo sapiens) [TaxId: 9606]
 d1cb5a_ :   (ASN358)  (PRO445)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Bleomycin hydrolase |Human (Homo sapiens) [TaxId: 9606]
 d2e00a_ :   (LYS356)  (PRO444)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Bleomycin hydrolase |Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]
 d3gcba_ :   (GLN355)  (PRO444)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Bleomycin hydrolase |Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]
 d2dzya_ :   (GLN355)  (PRO444)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Bleomycin hydrolase |Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]
 d1gcba_ :   (GLN355)  (PRO444)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Bleomycin hydrolase |Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   d.3