Protein Concepts Dictionary

Tableau information

Concept source:  d3daob_  amino acid (a.a.) range (LYS3)(THR108)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: EHHEHEEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (LYS3)    (ASP8) E1
	    (ILE9)   (VAL14) H2
	   (PRO23)   (LYS35) H3
	   (ILE38)   (GLY44) E4
	   (PHE47)   (PHE54) H5
	   (LEU61)   (THR65) E6
	   (THR69)   (THR73) E7
	   (LEU78)   (PRO82) E8
	   (ASP84)  (PRO100) H9
	  (CYS102)  (THR108) E10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                    
H2      -99.0°   H2                                                             
H3     -151.2°  109.7°   H3                                                      
E4      -19.2° -115.1°  133.5°   E4                                               
H5      114.4°   17.2°  -94.3°  131.7°   H5                                        
E6      -40.3° -133.8°  112.4°  -21.3°  151.0°   E6                                 
E7      130.4°  -53.1°  -72.1°  148.3°  -37.2°  161.9°   E7                          
E8      -34.2° -128.0°  118.7°  -15.1°  145.1°    6.3° -159.9°   E8                   
H9       13.6°  -85.7°  164.1°   30.6°  101.5°   51.8° -122.4°   45.4°   H9            
E10     163.6°   81.2°  -33.9° -162.8°   64.2° -144.5°   38.4° -150.7° -160.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.7°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3daob_ :     (LYS3)  (THR108)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Eubacterium rectale
 d2rb5a_ :     (LYS3)  (GLU108)   [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Sugar-phosphate phosphatase BT4131 |Bacteroides thetaiotaomicron [TaxId: 818]
 d1wr8b_ :     (LYS4)  (SER103)   [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Phosphoglycolate phosphatase, PGPase |Pyrococcus horikoshii [TaxId: 53953]
 d3r4ca_ :     (LYS3)  (LEU103)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 818]
 d2rara_ :     (LYS3)  (GLU108)   [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Sugar-phosphate phosphatase BT4131 |Bacteroides thetaiotaomicron [TaxId: 818]
 d1wr8a_ :     (LYS4)  (SER103)   [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Phosphoglycolate phosphatase, PGPase |Pyrococcus horikoshii [TaxId: 53953]
 d2hf2b_ :     (LYS4)  (GLY108)   [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d1rlma_ :     (LYS4)  (GLY108)   [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Sugar phosphatase SupH (YbiV) |Escherichia coli [TaxId: 562]
 d1rkqa_ :     (LYS5)  (ARG113)   [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Hypothetical protein YidA |Escherichia coli [TaxId: 562]
 d3daoa_ :     (LYS3)  (PRO109)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Eubacterium rectale
 d1nrwa_ :     (LYS2)  (THR105)   [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Hypothetical protein YwpJ |Bacillus subtilis [TaxId: 1423]
 d1rlta_ :     (LYS4)  (GLY108)   [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Sugar phosphatase SupH (YbiV) |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 c.108