Protein Concepts Dictionary

Tableau information

Concept source:  d3mvxa_  amino acid (a.a.) range (LEU340)(ALA462)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (LEU340)  (PHE346) E1
	  (ALA351)  (GLY368) H2
	  (GLY368)  (GLU376) E3
	  (GLU378)  (ARG386) H4
	  (GLY391)  (ALA400) E5
	  (ALA400)  (HIS405) H6
	  (HIS405)  (MET411) H7
	  (ALA417)  (GLN423) H8
	  (LYS428)  (THR441) H9
	  (ASP443)  (ALA462) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                    
H2      170.3°   H2                                                             
E3      -27.7° -161.9°   E3                                                      
H4     -125.6°   53.4°  122.2°   H4                                               
E5      -45.4°  126.7°  -67.4°  -89.1°   E5                                        
H6      148.9°  -35.4°  130.7°   29.9° -119.0°   H6                                 
H7      122.8°  -66.8°   95.1°  -70.9°  141.2°  -47.3°   H7                          
H8      172.9°  -12.7°  149.9°   47.6° -130.7°  -24.2°  -55.4°   H8                   
H9      -38.2°  133.7°  -60.8°  -95.2°    7.1°  125.0° -140.8°  137.8°   H9            
H10    -120.2°  -64.5°  108.0°  112.2° -155.3°   83.1°   61.7°   65.8° -151.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3mvwb_ :   (LEU340)  (ASP453)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
 d1zlqa1 :   (LEU340)  (ALA462)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
 d3qimb_ :   (LEU340)  (ASP453)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
 d3dp8a_ :   (LEU340)  (ALA462)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
 d1zlqb_ :   (LEU340)  (ALA462)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
 d3qima_ :   (LEU340)  (ALA462)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
 d1uiua_ :   (LEU340)  (ALA462)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
 d3dp8c_ :   (LEU340)  (ALA462)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
 d3e3kb_ :   (LEU340)  (ALA462)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
 d4oera_ :   (LEU338)  (ALA460)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Brucella suis [TaxId: 29461]
 d1uiva_ :   (LEU340)  (ALA462)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
 d4dcxb_ :   (LEU340)  (ALA462)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
 d3mvxa_ :   (LEU340)  (ALA462)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.94