Protein Concepts Dictionary

Tableau information

Concept source:  d4o4ba_  amino acid (a.a.) range (GLY5)(ASN118)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHHHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLY5)   (ILE11) E1
	   (GLY16)   (GLY32) H2
	   (ILE33)   (HIS39) E3
	   (LYS42)   (GLY54) H4
	   (ASP58)   (TRP62) E5
	   (HIS64)   (GLY74) H6
	   (ASP82)   (LYS88) H7
	   (PHE92)   (ARG98) H8
	  (ILE108)  (LEU113) E9
	  (SER114)  (ASN118) E10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                    
H2      169.1°   H2                                                             
E3      -20.0°  169.1°   E3                                                      
H4     -146.7°  -36.5°  133.1°   H4                                               
E5      -15.4°  153.7°  -34.8° -146.6°   E5                                        
H6      132.6°  -52.4°  116.9°  -16.6°  137.4°   H6                                 
H7      -25.5°  153.9°  -36.0° -168.4°  -30.9° -151.8°   H7                          
H8      101.0°  -87.5°   81.7°  -55.6°  113.1°  -39.7°  113.0°   H8                   
E9        5.1°  167.9°  -18.6° -141.7°  -16.3° -127.9°  -30.5°   97.8°   E9            
E10     -50.2°  130.5°  -57.9°  159.6°  -53.5° -156.3°   24.7° -120.7°  -55.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3w15c_ :    (GLY22)  (ASN135)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
 d4r6ka_ :    (VAL13)  (GLU135)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
 d1svxb_ :     (GLY5)  (ASN118)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
 d3kjta_ :     (GLY5)  (ASN118)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli K-12 [TaxId: 83333]
 d1ursa_ :    (ILE32)  (ASN148)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Alicyclobacillus acidocaldarius [TaxId: 405212]
 d1nmua_ :     (GLY5)  (ASN118)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
 d3sera_ :     (GLY6)  (ASN119)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
 d1a7lb_ :     (LYS6)  (ASN118)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
 d1mpba_ :     (GLY5)  (ASN118)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
 d2gh9a_ :     (LYS2)  (ASN120)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermus thermophilus [TaxId: 262724]
 d2ghab_ :     (PRO5)  (ASN118)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
 d1laxa_ :     (GLY5)  (ASN118)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
 d4hs7a_ :    (ASN44)  (ASN159)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Staphylococcus aureus [TaxId: 93061]
 d3csba2 :     (LYS6)  (ASN118)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli K-12 [TaxId: 83333]
 d4o4ba_ :     (GLY5)  (ASN118)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Escherichia coli [TaxId: 536056]
 d3lbsa_ :     (GLY5)  (ASN118)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Escherichia coli [TaxId: 562]
 d3ttna_ :    (SER28)  (ASN140)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
 d1t0ka_ :     (GLY5)  (ASN118)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
 d1a7la_ :     (LYS6)  (ASN118)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
 d1ziua1 :     (LYS6)  (ASN118)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
 d1urda_ :    (ILE32)  (ASN148)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Alicyclobacillus acidocaldarius [TaxId: 405212]
 d3puve_ :     (GLY5)  (ASN118)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d1poy1_ :    (ASN27)  (ASN139)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Spermidine/putrescine-binding protein PotD |Escherichia coli [TaxId: 562]
 d3setc_ :     (GLY6)  (ASN119)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
 d1fqaa_ :     (GLY5)  (ASN118)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
 d1a7lc_ :     (LYS6)  (ASN118)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
 d1a99a_ :    (GLN29)  (ASN143)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Putrescine receptor (PotF) |Escherichia coli [TaxId: 562]
 d3lc8b_ :     (GLY5)  (ASN118)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Escherichia coli [TaxId: 562]
 d3ttka_ :    (LYS28)  (ASN141)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Pseudomonas aeruginosa [TaxId: 287]
 d2ghbb_ :     (PRO5)  (ASN118)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
 d1hsja2 :     (GLY5)  (ASN118)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
 d1urga_ :    (ILE32)  (ASN148)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Alicyclobacillus acidocaldarius [TaxId: 405212]
 d4jdfa_ :    (GLN29)  (ASN143)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d3q29c_ :     (GLY6)  (ASN119)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Escherichia coli [TaxId: 562]
 d3ttma_ :    (LYS28)  (PRO142)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Pseudomonas aeruginosa [TaxId: 287]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.94