Protein Concepts Dictionary

Tableau information

Concept source:  d1ybva_  amino acid (a.a.) range (LYS30)(MET162)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (LYS30)   (GLY36) E1
	   (ILE41)   (GLY53) H2
	   (LYS55)   (ALA61) E3
	   (THR64)   (GLY78) H4
	   (SER79)   (LYS85) E5
	   (VAL91)   (MET97) H6
	   (PHE98)  (ILE104) H7
	  (ASP109)  (SER113) E8
	  (THR127)  (HIS152) H9
	  (GLY157)  (MET162) E10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                    
H2     -168.4°   H2                                                             
E3      -15.2° -167.6°   E3                                                      
H4      155.5°  -19.5°  170.8°   H4                                               
E5      -37.5°  149.3°  -22.4° -166.8°   E5                                        
H6      156.4°  -12.1°  160.5°  -21.6°  151.9°   H6                                 
H7      144.5°  -24.2°  153.7°  -23.1°  157.8°  -13.5°   H7                          
E8      -13.2°  165.9°  -24.9°  146.8°  -44.8°  158.2°  144.7°   E8                   
H9      170.0°  -16.2°  155.6°  -33.4°  134.1°  -26.2°  -39.5° -173.6°   H9            
E10     -23.7°  150.7°  -38.4°  132.6°  -59.8°  142.8°  129.4°  -15.6°  166.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.7°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1u28a1 :   (GLY168)  (ALA294)   [view usage] : c.2.1.4 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Formate/glycerate dehydrogenases, NAD-domain |Nicotinamide nucleotide transhydrogenase dI component |Rhodospirillum rubrum [TaxId: 1085]
 d1g0oc_ :    (LYS30)  (MET162)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) |Fungus (Magnaporthe grisea) [TaxId: 148305]
 d4oa5e_ :    (HIS58)  (ASN163)   [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Anaplasma phagocytophilum [TaxId: 212042]
 d2bh2b2 :   (ARG289)  (SER388)   [view usage] : c.66.1.40 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |(Uracil-5-)-methyltransferase |rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain |Escherichia coli [TaxId: 562]
 d2xnja2 :   (LEU118)  (TYR256)   [view usage] : c.25.1.1 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Reductases |automated matches |Escherichia coli [TaxId: 562]
 d4h17b_ :    (ALA23)  (ASP155)   [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Pseudomonas putida [TaxId: 160488]
 d4cbya_ :   (SER832)  (LEU972)   [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1fdra2 :   (LEU109)  (TRP248)   [view usage] : c.25.1.1 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Reductases |Ferredoxin reductase (flavodoxin reductase) |Escherichia coli [TaxId: 562]
 d2ph3a_ :     (ARG2)  (THR138)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
 d4cbyb_ :   (SER832)  (LEU972)   [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2bh2a2 :   (ASP288)  (SER388)   [view usage] : c.66.1.40 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |(Uracil-5-)-methyltransferase |rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain |Escherichia coli [TaxId: 562]
 d1ybva_ :    (LYS30)  (MET162)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) |Fungus (Magnaporthe grisea) [TaxId: 148305]
 d4cbyd_ :   (SER832)  (LEU972)   [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1g0oa_ :    (LYS30)  (MET162)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) |Fungus (Magnaporthe grisea) [TaxId: 148305]
 d1krha2 :   (PRO212)  (LYS334)   [view usage] : c.25.1.2 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Aromatic dioxygenase reductase-like |Benzoate dioxygenase reductase |Acinetobacter sp. [TaxId: 472]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.2,    c.66,    c.42,    c.25,    c.33