Tableau information
Concept source: d1ybva_ amino acid (a.a.) range (LYS30)(MET162)
nSSEs in this Concept: 10
String of secondary struct.elems. (SSEs) defining this concept: EHEHEHHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS30) (GLY36) E1
(ILE41) (GLY53) H2
(LYS55) (ALA61) E3
(THR64) (GLY78) H4
(SER79) (LYS85) E5
(VAL91) (MET97) H6
(PHE98) (ILE104) H7
(ASP109) (SER113) E8
(THR127) (HIS152) H9
(GLY157) (MET162) E10
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -168.4° H2
E3 -15.2° -167.6° E3
H4 155.5° -19.5° 170.8° H4
E5 -37.5° 149.3° -22.4° -166.8° E5
H6 156.4° -12.1° 160.5° -21.6° 151.9° H6
H7 144.5° -24.2° 153.7° -23.1° 157.8° -13.5° H7
E8 -13.2° 165.9° -24.9° 146.8° -44.8° 158.2° 144.7° E8
H9 170.0° -16.2° 155.6° -33.4° 134.1° -26.2° -39.5° -173.6° H9
E10 -23.7° 150.7° -38.4° 132.6° -59.8° 142.8° 129.4° -15.6° 166.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1u28a1 : (GLY168) (ALA294) [view usage] : c.2.1.4 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Formate/glycerate dehydrogenases, NAD-domain |Nicotinamide nucleotide transhydrogenase dI component |Rhodospirillum rubrum [TaxId: 1085]
d1g0oc_ : (LYS30) (MET162) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) |Fungus (Magnaporthe grisea) [TaxId: 148305]
d4oa5e_ : (HIS58) (ASN163) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Anaplasma phagocytophilum [TaxId: 212042]
d2bh2b2 : (ARG289) (SER388) [view usage] : c.66.1.40 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |(Uracil-5-)-methyltransferase |rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain |Escherichia coli [TaxId: 562]
d2xnja2 : (LEU118) (TYR256) [view usage] : c.25.1.1 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Reductases |automated matches |Escherichia coli [TaxId: 562]
d4h17b_ : (ALA23) (ASP155) [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Pseudomonas putida [TaxId: 160488]
d4cbya_ : (SER832) (LEU972) [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1fdra2 : (LEU109) (TRP248) [view usage] : c.25.1.1 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Reductases |Ferredoxin reductase (flavodoxin reductase) |Escherichia coli [TaxId: 562]
d2ph3a_ : (ARG2) (THR138) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d4cbyb_ : (SER832) (LEU972) [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2bh2a2 : (ASP288) (SER388) [view usage] : c.66.1.40 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |(Uracil-5-)-methyltransferase |rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain |Escherichia coli [TaxId: 562]
d1ybva_ : (LYS30) (MET162) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) |Fungus (Magnaporthe grisea) [TaxId: 148305]
d4cbyd_ : (SER832) (LEU972) [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1g0oa_ : (LYS30) (MET162) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) |Fungus (Magnaporthe grisea) [TaxId: 148305]
d1krha2 : (PRO212) (LYS334) [view usage] : c.25.1.2 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Aromatic dioxygenase reductase-like |Benzoate dioxygenase reductase |Acinetobacter sp. [TaxId: 472]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.2, c.66, c.42, c.25, c.33