Protein Concepts Dictionary

Tableau information

Concept source:  d1kvsa_  amino acid (a.a.) range (ARG2)(THR124)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHEHHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ARG2)    (GLY7) E1
	   (GLY10)   (GLY24) H2
	   (ASP26)   (ASN32) E3
	   (LYS37)   (GLY49) H4
	   (LYS50)   (GLU56) E5
	   (ASN61)   (ALA73) H6
	   (ASP75)   (PHE80) E7
	   (ALA85)   (PRO93) H8
	   (PRO93)  (ALA114) H9
	  (ASN118)  (THR124) E10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                    
H2     -159.6°   H2                                                             
E3      -26.8° -166.3°   E3                                                      
H4      139.7°  -28.1°  165.2°   H4                                               
E5      -55.5°  142.6°  -29.0°  159.9°   E5                                        
H6      147.6°  -12.6°  167.9°  -20.9°  154.8°   H6                                 
E7      -13.6°  148.0°  -40.2°  126.1°  -68.5°  135.5°   E7                          
H8       76.1° -123.0°   50.0° -139.6°   21.1° -135.5°   88.8°   H8                   
H9      171.3°  -26.8°  144.9°  -48.9°  116.7°  -39.2° -174.8°  -96.4°   H9            
E10     -21.2°  144.1°  -46.4°  119.2°  -73.4°  131.6°   -9.5°  -92.6° -167.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.4°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4fc6d_ :    (LYS29)  (THR164)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1hzja_ :     (ALA2)  (SER132)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) |Human (Homo sapiens) [TaxId: 9606]
 d1rpnc_ :     (ARG3)  (ALA124)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |GDP-mannose 4,6-dehydratase |Pseudomonas aeruginosa [TaxId: 287]
 d2hunb_ :     (MET4)  (THR127)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
 d1r6da_ :     (MET1)  (SER126)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |dTDP-glucose 4,6-dehydratase (RmlB) |Streptomyces venezuelae [TaxId: 54571]
 d4lisa_ :     (GLY4)  (SER128)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Aspergillus nidulans [TaxId: 227321]
 d2c5aa1 :    (ILE30)  (ALA141)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |GDP-mannose-3', 5'-epimerase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 d4fc6a_ :    (LYS29)  (THR164)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1r66a_ :     (MET1)  (SER126)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |dTDP-glucose 4,6-dehydratase (RmlB) |Streptomyces venezuelae [TaxId: 54571]
 d4fc6b_ :    (LYS29)  (THR164)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1lrja_ :     (ARG2)  (SER124)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) |Escherichia coli [TaxId: 562]
 d1nxqa_ :     (LYS7)  (MET140)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |R-specific alcohol dehydrogenase |Lactobacillus brevis [TaxId: 1580]
 d1rpna_ :     (ARG3)  (ALA124)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |GDP-mannose 4,6-dehydratase |Pseudomonas aeruginosa [TaxId: 287]
 d3enka_ :     (GLY5)  (SER128)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 320372]
 d1kvsa_ :     (ARG2)  (THR124)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) |Escherichia coli [TaxId: 562]
 d1lrka_ :     (ARG2)  (SER124)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) |Escherichia coli [TaxId: 562]
 d3enkb_ :     (GLY5)  (SER128)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 320372]
 d1ek5a_ :     (ALA2)  (SER132)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) |Human (Homo sapiens) [TaxId: 9606]
 d1ek6b_ :     (GLU3)  (SER132)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) |Human (Homo sapiens) [TaxId: 9606]
 d4lisb_ :     (GLY4)  (SER128)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Aspergillus nidulans [TaxId: 227321]
 d2p5ua_ :     (MET1)  (ALA115)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.2