Protein Concepts Dictionary

Tableau information

Concept source:  d3ey4a_  amino acid (a.a.) range (VAL37)(VAL168)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHEHHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (VAL37)   (GLY41) E1
	   (ILE46)   (GLY58) H2
	   (HIS60)   (ALA65) E3
	   (SER67)   (GLY82) H4
	   (ALA84)   (ALA90) E5
	   (MET96)  (MET110) H6
	  (ASP114)  (ASN119) E7
	  (ASP132)  (LEU155) H8
	  (LEU155)  (SER161) H9
	  (ASN162)  (VAL168) E10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                    
H2     -157.0°   H2                                                             
E3      -13.9° -165.0°   E3                                                      
H4      144.7°  -30.7°  157.2°   H4                                               
E5      -35.8°  153.2°  -22.2°  173.7°   E5                                        
H6      147.8°  -10.7°  159.1°  -27.1°  158.4°   H6                                 
E7      -13.8°  153.7°  -24.9°  132.4°  -46.9°  143.0°   E7                          
H8      170.9°   20.5°  161.8°  -41.0°  139.9°  -31.0° -173.2°   H8                   
H9     -144.6°   38.5° -153.5°   11.8° -162.0°   37.3° -131.0°  -43.1°   H9            
E10     -18.6°  147.2°  -31.0°  126.5°  -53.1°  136.6°   -6.6°  166.8°  126.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.8°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1xhla_ :     (SER8)  (SER145)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Hypothetical protein F25D1.5 |Nematode (Caenorhabditis elegans) [TaxId: 6239]
 d4cqmj_ :     (LYS3)  (GLY134)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4ixta_ :     (SER2)  (THR131)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Rhizobium radiobacter [TaxId: 358]
 d3g49a_ :    (VAL12)  (SER144)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |11-beta-hydroxysteroid dehydrogenase 1 |Guinea pig (Cavia porcellus) [TaxId: 10141]
 d3zn2b_ :     (SER2)  (THR131)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 358]
 d3sjua_ :     (GLN5)  (ILE140)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Streptomyces griseoruber [TaxId: 1943]
 d2d4ea_ :   (ASP153)  (LYS275)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
 d4nmha_ :    (VAL37)  (ILE168)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |11-beta-hydroxysteroid dehydrogenase 1 |Mouse (Mus musculus) [TaxId: 10090]
 d3lyla_ :     (LYS6)  (ILE139)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Francisella tularensis [TaxId: 177416]
 d3ucxa_ :     (LYS8)  (ASN142)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
 d3tn7a_ :     (LYS2)  (THR135)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermococcus sibiricus [TaxId: 604354]
 d4ixtb_ :     (SER2)  (THR131)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Rhizobium radiobacter [TaxId: 358]
 d4nmhb_ :    (LYS35)  (ILE168)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |11-beta-hydroxysteroid dehydrogenase 1 |Mouse (Mus musculus) [TaxId: 10090]
 d3h6kc_ :    (LYS36)  (VAL168)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |11-beta-hydroxysteroid dehydrogenase 1 |Human (Homo sapiens) [TaxId: 9606]
 d3oeca_ :    (LYS25)  (PHE170)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium thermoresistibile [TaxId: 1797]
 d3gmda_ :    (VAL37)  (ILE168)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |11-beta-hydroxysteroid dehydrogenase 1 |Mouse (Mus musculus) [TaxId: 10090]
 d3f1ka_ :    (ARG13)  (SER153)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d3lf1a_ :     (ALA9)  (VAL144)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d4bgva1 :     (SER4)  (THR125)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Picrophilus torridus [TaxId: 82076]
 d1y5ma1 :    (VAL37)  (ILE168)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |11-beta-hydroxysteroid dehydrogenase 1 |Mouse (Mus musculus) [TaxId: 10090]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.2,    c.82