Protein Concepts Dictionary

Tableau information

Concept source:  d3f6pa_  amino acid (a.a.) range (LYS3)(ARG119)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (LYS3)    (ASP9) E1
	   (GLU11)   (GLY26) H2
	   (GLU28)   (ASP34) E3
	   (GLY35)   (GLU44) H4
	   (ASP48)   (ASP53) E5
	   (GLY61)   (LYS70) H6
	   (MET74)   (THR80) E7
	   (SER84)   (GLY95) H8
	   (ASP97)  (PRO103) E9
	  (SER105)  (ARG119) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                    
H2      169.5°   H2                                                             
E3      -24.4°  165.3°   E3                                                      
H4      168.5°  -21.7°  145.8°   H4                                               
E5      -16.9°  153.0°  -39.2°  174.6°   E5                                        
H6      143.5°  -47.0°  119.6°  -26.2°  158.4°   H6                                 
E7      -33.8°  135.7°  -56.8°  157.3°  -17.6° -173.8°   E7                          
H8      134.6°  -55.9°  111.3°  -34.6°  150.5°   -9.6°  168.1°   H8                   
E9      -55.6°  114.8°  -79.8°  132.0°  -44.7°  154.9°  -31.2°  156.0°   E9            
H10     123.8°  -66.1°   99.4°  -47.8°  136.0°  -23.4°  150.7°  -20.9° -175.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2a9oa_ :     (LYS2)  (ARG117)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |DNA-binding response regulator MicA, N-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
 d3lteo_ :    (LYS68)  (VAL184)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Bermanella marisrubri [TaxId: 207949]
 d2jvia_ :     (ASN3)  (TYR118)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |Sporulation response regulator Spo0F |Bacillus subtilis [TaxId: 1423]
 d2pkxb_ :     (MSE1)  (ASN119)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |PhoP receiver domain |Escherichia coli [TaxId: 562]
 d2rjna_ :     (TYR8)  (ASN133)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Neptuniibacter caesariensis [TaxId: 207954]
 d2ayxa1 :   (MET825)  (SER946)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |Sensor kinase protein RcsC, C-terminal domain |Escherichia coli [TaxId: 562]
 d2qzja_ :     (THR5)  (MSE122)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
 d3f6pa_ :     (LYS3)  (ARG119)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |automated matches |Bacillus subtilis [TaxId: 224308]
 d1f51e_ :  (GLU1204) (TYR1318)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |Sporulation response regulator Spo0F |Bacillus subtilis [TaxId: 1423]
 d3ltel_ :    (LYS68)  (VAL184)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Bermanella marisrubri [TaxId: 207949]
 d2pkxa1 :     (MSE1)  (ASN119)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |PhoP receiver domain |Escherichia coli [TaxId: 562]
 d3lteg_ :    (LYS68)  (VAL184)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Bermanella marisrubri [TaxId: 207949]
 d3eulb_ :    (ARG10)  (GLY128)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
 d3kcna_ :     (ARG8)  (THR139)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Rhodopirellula baltica [TaxId: 265606]
 d1oxkb_ :  (SER1087) (CYS1210)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |Response regulator Sin1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d2zwma_ :     (LYS2)  (ARG118)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |automated matches |Bacillus subtilis [TaxId: 1423]
 d1oxbb_ :  (SER1087) (GLU1208)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |Response regulator Sin1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d3ltea_ :    (LYS68)  (VAL184)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Bermanella marisrubri [TaxId: 207949]
 d1zh2a1 :     (THR2)  (SER120)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |Transcriptional regulatory protein KdpE, N-terminal domain |Escherichia coli [TaxId: 562]
 d3ltei_ :    (LYS68)  (VAL184)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Bermanella marisrubri [TaxId: 207949]
 d1fspa_ :     (MET2)  (TYR118)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |Sporulation response regulator Spo0F |Bacillus subtilis [TaxId: 1423]
 d1a04a2 :     (ALA7)  (ALA124)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |Nitrate/nitrite response regulator (NarL), receiver domain |Escherichia coli [TaxId: 562]
 d4h60a_ :     (ALA2)  (LEU119)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Vibrio cholerae [TaxId: 345073]
 d3ltec_ :    (LYS68)  (ASN185)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Bermanella marisrubri [TaxId: 207949]
 d3jtea_ :     (ALA4)  (MET128)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Clostridium thermocellum [TaxId: 203119]
 d2i6fc_ :     (LYS3)  (LEU119)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Myxococcus xanthus [TaxId: 34]
 d1xhea1 :     (PRO4)  (THR121)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |Aerobic respiration control protein ArcA, N-terminal domain |Escherichia coli [TaxId: 562]
 d1qkka_ :     (PRO5)  (LEU143)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |Transcriptional regulatory protein DctD, receiver domain |Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]
 d3q9sa1 :     (GLN4)  (LEU118)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Deinococcus radiodurans [TaxId: 1299]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.23