Protein Concepts Dictionary

Tableau information

Concept source:  d2j0ta_  amino acid (a.a.) range (LEU114)(TYR260)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: EHEEEHEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (LEU114)  (ILE118) E1
	  (PRO126)  (THR145) H2
	  (PRO146)  (LYS151) E3
	  (ASP158)  (PHE163) E4
	  (LEU181)  (PHE185) E5
	  (PRO189)  (ASP194) H6
	  (ASP194)  (ASP198) E7
	  (HIS213)  (GLY225) H8
	  (ALA234)  (TYR237) H9
	  (ALA249)  (TYR260) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                    
H2      161.5°   H2                                                             
E3      -29.9°  166.1°   E3                                                      
E4      -22.2°  140.3°  -52.0°   E4                                               
E5      144.1°  -50.0°  116.3°  162.7°   E5                                        
H6      -68.3°  101.3°  -92.5°  -50.5° -146.6°   H6                                 
E7      -28.6°  133.8°  -58.5°   -6.5°  165.2°  -46.5°   E7                          
H8      139.6°  -46.9°  119.6°  148.0°  -20.0°  147.5°  147.2°   H8                   
H9       16.6° -156.7°   26.6°   33.8° -129.9°   83.4°   39.3° -123.0°   H9            
H10     125.4°  -69.0°   97.3°  146.1°   19.0° -160.7°  151.2°   30.2° -112.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1b8ya_ :    (HIS96)  (TYR220)   [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Stromelysin-1 (MMP-3) |Human (Homo sapiens), fibroblast [TaxId: 9606]
 d1qica_ :    (LEU97)  (TYR220)   [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Stromelysin-1 (MMP-3) |Human (Homo sapiens), fibroblast [TaxId: 9606]
 d1i73a_ :    (LEU93)  (GLY242)   [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Neutrophil collagenase (MMP-8) |Human (Homo sapiens) [TaxId: 9606]
 d1gkcb_ :   (ASN120)  (TYR443)   [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Gelatinase B (MMP-9) |Human (Homo sapiens) [TaxId: 9606]
 d1bzsa_ :    (LEU93)  (ILE237)   [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Neutrophil collagenase (MMP-8) |Human (Homo sapiens) [TaxId: 9606]
 d2ow2a_ :   (ASN120)  (TYR443)   [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Gelatinase B (MMP-9) |Human (Homo sapiens) [TaxId: 9606]
 d1caqa_ :    (HIS96)  (TYR246)   [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Stromelysin-1 (MMP-3) |Human (Homo sapiens), fibroblast [TaxId: 9606]
 d1gkda_ :   (ASN120)  (TYR443)   [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Gelatinase B (MMP-9) |Human (Homo sapiens) [TaxId: 9606]
 d2j0ta_ :   (LEU114)  (TYR260)   [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Fibroblast collagenase (MMP-1) |Human (Homo sapiens) [TaxId: 9606]
 d4h1qa_ :   (ASN120)  (TYR268)   [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Gelatinase B (MMP-9) |Human (Homo sapiens) [TaxId: 9606]
 d1gkdb_ :   (ASN120)  (TYR443)   [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Gelatinase B (MMP-9) |Human (Homo sapiens) [TaxId: 9606]
 d3tt4a_ :    (LEU93)  (GLY242)   [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1gkca_ :   (ASN120)  (TYR443)   [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Gelatinase B (MMP-9) |Human (Homo sapiens) [TaxId: 9606]
 d1youa_ :   (LEU118)  (TYR266)   [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Collagenase-3 (MMP-13) |Human (Homo sapiens) [TaxId: 9606]
 d1xucb_ :   (LEU118)  (TYR266)   [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Collagenase-3 (MMP-13) |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  d.92