Protein Concepts Dictionary

Tableau information

Concept source:  d3gsdd_  amino acid (a.a.) range (ASN17)(LEU118)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: EHEEEEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ASN17)   (PRO26) E1
	   (GLU28)   (LYS42) H2
	   (ALA45)   (PRO51) E3
	   (ALA53)   (TYR57) E4
	   (LEU63)   (TYR67) E5
	   (TYR67)   (PHE73) E6
	   (ASN76)   (GLN80) H7
	   (GLN80)   (HIS90) H8
	   (PRO96)  (PRO102) E9
	  (LYS108)  (LEU118) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                    
H2      149.5°   H2                                                             
E3      -34.1°  176.3°   E3                                                      
E4      -80.3°   98.6°  -80.8°   E4                                               
E5      102.2°  -70.3° -111.0°  162.7°   E5                                        
E6      162.0°  -13.0°  163.6°  102.2°  -70.1°   E6                                 
H7       53.8°  108.3°  -73.5°  -37.4°  131.9°  118.6°   H7                          
H8       -8.3°  141.4°  -42.2°  -82.9°   97.4°  153.7°  -52.5°   H8                   
E9      158.0°  -51.6°  125.0°  106.6°  -77.5°  -38.6° -141.1°  163.8°   E9            
H10      68.2°   82.2° -101.0°  -73.1°   91.7°  -95.2°   42.7°   61.2° -133.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1naqd_ :    (ALA10)  (LEU111)   [view usage] : d.58.5.2 |Ferredoxin-like |GlnB-like |Divalent ion tolerance proteins CutA (CutA1) |Cut A1 |Escherichia coli [TaxId: 562]
 d3opka_ :    (PRO12)  (LEU114)   [view usage] : d.58.5.2 |Ferredoxin-like |GlnB-like |Divalent ion tolerance proteins CutA (CutA1) |automated matches |Salmonella enterica [TaxId: 99287]
 d1naqb_ :    (ALA10)  (ALA109)   [view usage] : d.58.5.2 |Ferredoxin-like |GlnB-like |Divalent ion tolerance proteins CutA (CutA1) |Cut A1 |Escherichia coli [TaxId: 562]
 d1oscb_ :    (SER10)  (GLU112)   [view usage] : d.58.5.2 |Ferredoxin-like |GlnB-like |Divalent ion tolerance proteins CutA (CutA1) |Mammalian CutA-like protein |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d3opkb_ :    (GLU13)  (LEU114)   [view usage] : d.58.5.2 |Ferredoxin-like |GlnB-like |Divalent ion tolerance proteins CutA (CutA1) |automated matches |Salmonella enterica [TaxId: 99287]
 d3ah6a_ :    (ALA10)  (LEU111)   [view usage] : d.58.5.2 |Ferredoxin-like |GlnB-like |Divalent ion tolerance proteins CutA (CutA1) |Cut A1 |Escherichia coli [TaxId: 562]
 d1nzaa_ :     (GLU3)  (THR102)   [view usage] : d.58.5.2 |Ferredoxin-like |GlnB-like |Divalent ion tolerance proteins CutA (CutA1) |Cut A1 |Thermus thermophilus [TaxId: 274]
 d3gsda_ :    (ASN17)  (LEU118)   [view usage] : d.58.5.2 |Ferredoxin-like |GlnB-like |Divalent ion tolerance proteins CutA (CutA1) |automated matches |Yersinia pestis [TaxId: 214092]
 d3gsdd_ :    (ASN17)  (LEU118)   [view usage] : d.58.5.2 |Ferredoxin-like |GlnB-like |Divalent ion tolerance proteins CutA (CutA1) |automated matches |Yersinia pestis [TaxId: 214092]
 d3aa8b_ :    (ALA10)  (LEU111)   [view usage] : d.58.5.2 |Ferredoxin-like |GlnB-like |Divalent ion tolerance proteins CutA (CutA1) |Cut A1 |Escherichia coli [TaxId: 562]
 d3aa9a_ :    (VAL12)  (LEU111)   [view usage] : d.58.5.2 |Ferredoxin-like |GlnB-like |Divalent ion tolerance proteins CutA (CutA1) |Cut A1 |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  d.58