Protein Concepts Dictionary

Tableau information

Concept source:  d1kq7a_  amino acid (a.a.) range (ARG5)(ALA223)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: EEHHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ARG5)    (ASP9) E1
	   (GLY12)   (PRO17) E2
	   (ALA24)   (ARG34) H3
	   (THR42)   (GLY63) H4
	   (SER66)   (GLY83) H5
	   (GLY83)   (PHE89) H6
	   (GLY99)  (GLY119) H7
	  (PRO130)  (LYS136) H8
	  (SER140)  (ALA179) H9
	  (THR196)  (ALA223) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                    
E2      146.4°   E2                                                             
H3      -84.7°   85.9°   H3                                                      
H4       65.8° -122.0°  149.9°   H4                                               
H5     -115.8°   48.1°  -37.9° -165.5°   H5                                        
H6      -68.5°  128.6°  -54.5°  105.8°  -87.6°   H6                                 
H7      126.5°  -68.5° -148.7°  -60.9°  114.6°  130.2°   H7                          
H8      -70.1°   77.6°  -89.5°   86.3°  -81.2° -126.4°  101.7°   H8                   
H9     -109.4°   38.0°  -66.1°  128.1°  -37.4° -120.6°   99.7°   48.6°   H9            
H10      66.1° -141.0°  127.5°  -35.0°  159.5°   74.0°  -73.0° -116.9° -163.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1fupa_ :     (ARG5)  (ALA223)   [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Fumarase |Escherichia coli [TaxId: 562]
 d4adlb_ :    (ARG11)  (LEU218)   [view usage] : a.127.1.0 |L-aspartase-like |L-aspartase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d3gtda_ :     (ASN3)  (LEU225)   [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |automated matches |Rickettsia prowazekii [TaxId: 272947]
 d2fusa_ :     (ARG5)  (ALA223)   [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Fumarase |Escherichia coli [TaxId: 562]
 d3rrpa_ :     (GLU4)  (TRP176)   [view usage] : a.127.1.0 |L-aspartase-like |L-aspartase-like |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
 d1fura_ :     (ARG5)  (ALA223)   [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Fumarase |Escherichia coli [TaxId: 562]
 d1kq7a_ :     (ARG5)  (ALA223)   [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Fumarase |Escherichia coli [TaxId: 562]
 d1jswb_ :     (ASN4)  (VAL228)   [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |L-aspartate ammonia lyase |Escherichia coli [TaxId: 562]
 d1yfea_ :     (ARG5)  (ALA223)   [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d1fuoa_ :     (ARG5)  (ALA223)   [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Fumarase |Escherichia coli [TaxId: 562]
 d4adla_ :    (ARG11)  (LEU218)   [view usage] : a.127.1.0 |L-aspartase-like |L-aspartase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d4apba_ :    (ARG11)  (LEU218)   [view usage] : a.127.1.0 |L-aspartase-like |L-aspartase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d3r6vf_ :     (ARG6)  (TYR223)   [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |L-aspartate ammonia lyase |Bacillus sp., ym55-1 [TaxId: 1409]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 a.127