Tableau information
Concept source: d2y28a_ amino acid (a.a.) range (ARG12)(ARG143)
nSSEs in this Concept: 10
String of secondary struct.elems. (SSEs) defining this concept: EEHHEEEEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG12) (PRO17) E1
(SER29) (SER37) E2
(TRP47) (THR53) H3
(HIS61) (ILE67) H4
(HIS69) (HIS75) E5
(HIS75) (ARG80) E6
(GLU83) (VAL88) E7
(LYS92) (HIS96) E8
(ILE113) (GLU118) E9
(THR126) (ARG143) H10
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 99.5° E2
H3 -31.2° 128.9° H3
H4 -41.6° 141.1° -13.9° H4
E5 -137.3° -122.9° -106.5° 95.7° E5
E6 141.6° -47.0° 171.6° 164.8° 79.8° E6
E7 -26.4° 123.0° -5.9° -19.7° -111.8° 168.0° E7
E8 90.7° 45.9° 118.1° 119.6° -121.3° -53.6° 115.4° E8
E9 118.5° -20.7° 149.0° 159.6° -104.2° -26.3° 143.4° 44.8° E9
H10 -63.2° 156.7° -32.0° -24.2° 74.6° 154.3° -37.2° -141.9° 172.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2y2ca_ : (ARG12) (TYR144) [view usage] : d.118.1.1 |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |AmpD protein |Citrobacter freundii [TaxId: 546]
d2y28a_ : (ARG12) (ARG143) [view usage] : d.118.1.1 |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |AmpD protein |Citrobacter freundii [TaxId: 546]
d2y2cc_ : (ARG12) (PRO145) [view usage] : d.118.1.1 |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |AmpD protein |Citrobacter freundii [TaxId: 546]
d2y28c_ : (ARG12) (TYR144) [view usage] : d.118.1.1 |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |AmpD protein |Citrobacter freundii [TaxId: 546]
d2y2bb_ : (ARG12) (ARG143) [view usage] : d.118.1.1 |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |AmpD protein |Citrobacter freundii [TaxId: 546]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.118