Protein Concepts Dictionary

Tableau information

Concept source:  d3rfna_  amino acid (a.a.) range (THR31)(GLU152)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: EEHEHEEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (THR31)   (GLY37) E1
	   (ASN38)   (VAL44) E2
	   (ALA54)   (ASN69) H3
	   (ILE72)   (GLU76) E4
	   (ARG79)   (MET85) H5
	  (ARG101)  (VAL107) E6
	  (TRP111)  (ALA115) E7
	  (THR123)  (GLY128) H8
	  (GLY128)  (ARG138) E9
	  (GLY142)  (GLU152) E10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                    
E2      175.8°   E2                                                             
H3      -60.7°  122.4°   H3                                                      
E4     -117.2°   66.8°   78.1°   E4                                               
H5      103.7°  -72.7°  116.8°  137.9°   H5                                        
E6       68.8° -107.6°   96.6°  167.0°   35.0°   E6                                 
E7      -93.0°   90.2°  -80.9°  -31.7° -160.0°  159.9°   E7                          
H8       57.6° -119.5° -117.9°  125.2°  -84.4°  -67.7°   95.6°   H8                   
E9      137.5°  -40.9°  153.2°   75.4°  -81.5° -108.5°   78.7°   81.5°   E9            
E10     -19.3°  162.4°  -43.2° -111.7°  103.5°   69.9°  -95.9°   76.4°  156.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.5°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1v4pc_ :    (LYS28)  (PHE137)   [view usage] : d.67.1.2 |RRF/tRNA synthetase additional domain-like |ThrRS/AlaRS common domain |AlaX-like |Hypothetical protein PH0574 |Pyrococcus horikoshii [TaxId: 53953]
 d1wxob_ :    (TYR31)  (GLU152)   [view usage] : d.67.1.2 |RRF/tRNA synthetase additional domain-like |ThrRS/AlaRS common domain |AlaX-like |Hypothetical protein PH0574 |Pyrococcus horikoshii [TaxId: 53953]
 d1v7ob_ :    (SER32)  (LEU153)   [view usage] : d.67.1.2 |RRF/tRNA synthetase additional domain-like |ThrRS/AlaRS common domain |AlaX-like |Hypothetical protein PH0574 |Pyrococcus horikoshii [TaxId: 53953]
 d1wnua_ :    (TYR31)  (GLU154)   [view usage] : d.67.1.2 |RRF/tRNA synthetase additional domain-like |ThrRS/AlaRS common domain |AlaX-like |Hypothetical protein PH0574 |Pyrococcus horikoshii [TaxId: 53953]
 d1wnub_ :    (LYS28)  (GLU152)   [view usage] : d.67.1.2 |RRF/tRNA synthetase additional domain-like |ThrRS/AlaRS common domain |AlaX-like |Hypothetical protein PH0574 |Pyrococcus horikoshii [TaxId: 53953]
 d1v4pa_ :    (LYS28)  (PHE148)   [view usage] : d.67.1.2 |RRF/tRNA synthetase additional domain-like |ThrRS/AlaRS common domain |AlaX-like |Hypothetical protein PH0574 |Pyrococcus horikoshii [TaxId: 53953]
 d1v7oa_ :    (SER32)  (GLU154)   [view usage] : d.67.1.2 |RRF/tRNA synthetase additional domain-like |ThrRS/AlaRS common domain |AlaX-like |Hypothetical protein PH0574 |Pyrococcus horikoshii [TaxId: 53953]
 d3rfna_ :    (THR31)  (GLU152)   [view usage] : d.67.1.2 |RRF/tRNA synthetase additional domain-like |ThrRS/AlaRS common domain |AlaX-like |automated matches |Pyrococcus horikoshii [TaxId: 70601]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  d.67