Protein Concepts Dictionary

Tableau information

Concept source:  d4dm7b_  amino acid (a.a.) range (GLY33)(LYS141)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: EEEHHEEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (GLY33)   (VAL41) E1
	   (VAL44)   (GLY52) E2
	   (PRO55)   (HIS61) E3
	   (THR66)   (TRP70) H4
	   (TRP70)   (ALA78) H5
	   (THR82)   (ASP87) E6
	   (GLN93)   (THR99) E7
	  (SER102)  (SER118) H8
	  (PHE123)  (ASP129) E9
	  (ILE130)  (LYS141) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                    
E2      151.6°   E2                                                             
E3      -79.2°  124.8°   E3                                                      
H4      135.2°  -17.1°  132.8°   H4                                               
H5      104.7°  -51.0°  175.8°   43.2°   H5                                        
E6      -61.6°  144.5°  -20.2°  152.7° -163.9°   E6                                 
E7       25.7° -130.2°  -87.1°  113.1°   95.9°  -75.1°   E7                          
H8      122.1°  -45.8°  148.1°  -50.0°  -30.3°  148.6°  122.7°   H8                   
E9      -89.7°  112.8°  -12.4°  120.5°  163.5°  -32.6°  -93.9°  143.4°   E9            
H10      63.8°  -88.8°  140.6°  -74.7°  -42.7°  125.2°   53.7°  -69.5° -147.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.3°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4dnob_ :    (GLY33)  (THR135)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208963]
 d4dlnd_ :    (GLY33)  (ASN142)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208963]
 d3kd2a_ :    (GLY33)  (THR135)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208963]
 d1k5pa_ :    (GLU10)  (HIS121)   [view usage] : c.69.1.8 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloalkane dehalogenase |Haloalkane dehalogenase |Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
 d4dmhb_ :    (GLY33)  (THR135)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208963]
 d2psfb_ :    (ARG23)  (HIS133)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Renilla reniformis [TaxId: 6136]
 d3qyja_ :     (ASN4)  (ASP116)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Nostoc sp. [TaxId: 103690]
 d4b9ea_ :     (GLY9)  (LEU118)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d3pi6b_ :    (GLY33)  (ASN142)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208963]
 d1c4xa_ :     (THR3)  (GLU122)   [view usage] : c.69.1.10 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carbon-carbon bond hydrolase |2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) |Rhodococcus sp., strain rha1 [TaxId: 1831]
 d4dm7d_ :    (GLY33)  (LYS141)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208963]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.69