Protein Concepts Dictionary

Tableau information

Concept source:  d4j2ea2  amino acid (a.a.) range (GLN389)(ASN572)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: EEEHEHEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLN389)  (ILE400) E1
	  (ASN402)  (TYR406) E2
	  (TYR406)  (LEU412) E3
	  (MET415)  (ASN424) H4
	  (PHE434)  (PRO438) E5
	  (LEU439)  (ALA445) H6
	  (GLY460)  (TYR464) E7
	  (GLY469)  (LEU503) H8
	  (SER523)  (LEU533) H9
	  (SER534)  (ASN572) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                    
E2       78.4°   E2                                                             
E3      161.2°  -85.4°   E3                                                      
H4      118.6°   74.8°   46.7°   H4                                               
E5       37.6°  113.7° -160.5°  139.3°   E5                                        
H6      -55.2°   25.3°  106.9°   81.4°   92.5°   H6                                 
E7     -111.0°  -33.1°   54.4°  -63.9°  142.9°  -58.0°   E7                          
H8      -34.8°  -75.2° -147.7° -144.0°   44.3°  -63.1°  -99.1°   H8                   
H9      -61.5° -108.3°  134.1° -176.6°  -38.6° -100.9°  119.5°  -38.0°   H9            
H10     130.6°  121.6°   52.3°   47.2° -114.9°  126.2°  101.4° -159.1° -129.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3suna2 :   (GLN389)  (LEU533)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3qesa2 :   (GLN389)  (GLY568)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d4ki4a2 :   (GLN389)  (GLY568)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d4fjna2 :   (GLN389)  (GLY568)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3ne6a2 :   (GLN389)  (LEU566)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d4khna2 :   (ALA394)  (GLN556)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d4j2aa2 :   (GLN389)  (LEU566)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d1ig9a2 :   (ALA394)  (ASN572)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3suoa2 :   (GLN389)  (LEU566)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3spza2 :   (GLN389)  (ALA555)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d4j2ba2 :   (GLN389)  (LEU566)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d4j2ea2 :   (GLN389)  (ASN572)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3lzia2 :   (GLN389)  (LEU533)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3sjja2 :   (GLN389)  (GLY568)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3qeta2 :   (GLN389)  (LEU533)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   e.8