Protein Concepts Dictionary

Tableau information

Concept source:  d4k7gd_  amino acid (a.a.) range (ASN220)(GLY332)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: EEEHEEEEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ASN220)  (GLU234) E1
	  (ILE237)  (ARG247) E2
	  (GLY249)  (SER254) E3
	  (GLY257)  (GLY271) H4
	  (GLU277)  (SER283) E5
	  (SER287)  (ILE293) E6
	  (SER295)  (GLY300) E7
	  (SER303)  (ILE315) E8
	  (VAL318)  (ASP324) E9
	  (ASP327)  (GLY332) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                    
E2      153.6°   E2                                                             
E3      -49.4°  146.3°   E3                                                      
H4      -65.6°  127.6°  -78.6°   H4                                               
E5      112.7°  -41.1° -135.5°  136.9°   E5                                        
E6      -92.7°  111.9°   71.8°  -41.9°  151.0°   E6                                 
E7     -149.2°   38.7°  146.7°  -89.7°   72.4°  -78.7°   E7                          
E8       83.3°  -79.7°   83.9°  148.7°  -51.8°  150.6°  118.2°   E8                   
E9      155.8°    7.9° -151.3° -119.7°   45.8° -106.1°  -30.9°   87.3°   E9            
H10     -60.7°  133.9°  -72.3°    6.4°  141.5°  -41.8°  -95.7°  144.0° -126.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.9°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4k7gb_ :   (PHE224)  (GLY332)   [view usage] : d.21.1.0 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |automated matches |automated matches |Agrobacterium vitis [TaxId: 311402]
 d1w61b_ :   (CYS270)  (LYS386)   [view usage] : d.21.1.0 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
 d4lb0b_ :   (VAL228)  (GLY331)   [view usage] : d.21.1.0 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |automated matches |automated matches |Agrobacterium vitis [TaxId: 311402]
 d1w61a_ :   (CYS270)  (GLY388)   [view usage] : d.21.1.0 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
 d1w62a_ :   (CYS270)  (GLY388)   [view usage] : d.21.1.0 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
 d4k7gd_ :   (ASN220)  (GLY332)   [view usage] : d.21.1.0 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |automated matches |automated matches |Agrobacterium vitis [TaxId: 311402]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  d.21