Protein Concepts Dictionary

Tableau information

Concept source:  d2yd3a2  amino acid (a.a.) range (PHE134)(VAL225)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: EEEEHEEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (PHE134)  (MET139) E1
	  (LEU143)  (GLU147) E2
	  (ARG150)  (GLY160) E3
	  (GLU165)  (LYS170) E4
	  (ASP176)  (SER180) H5
	  (ARG183)  (SER189) E6
	  (LEU192)  (SER196) E7
	  (GLU198)  (LYS204) H8
	  (LYS204)  (SER212) E9
	  (GLY214)  (VAL225) E10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                    
E2       46.4°   E2                                                             
E3      144.9°  155.9°   E3                                                      
E4      -57.5°  -66.6°  136.2°   E4                                               
H5       40.2°   -7.0° -162.0°   61.4°   H5                                        
E6      110.8°  131.6°  -36.9°  146.1° -133.1°   E6                                 
E7      -37.6°  -20.4° -175.9°  -46.8°   14.6°  143.4°   E7                          
H8     -125.9° -172.2°   29.1°  110.8° -165.8°  -46.5° -154.9°   H8                   
E9      146.4°  125.0°  -31.2°  156.1° -131.7°  -45.5°  144.8°   60.4°   E9            
E10      22.1°  -36.6°  164.0°  -40.6°   29.7°  132.8°  -19.7° -136.8°  159.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2yd3a2 :   (PHE134)  (VAL225)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4pbwf2 :   (PHE133)  (ARG225)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
 d4pbve2 :   (PHE133)  (VAL224)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
 d4pbvc2 :   (PHE133)  (VAL224)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
 d3pxha2 :   (PHE134)  (VAL225)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.1