Tableau information
Concept source: d1tgoa1 amino acid (a.a.) range (ASP4)(ARG97)
nSSEs in this Concept: 10
String of secondary struct.elems. (SSEs) defining this concept: EEEEHEEEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP4) (THR9) E1
(LYS13) (PHE19) E2
(LYS27) (ASN33) E3
(ASN33) (LYS43) E4
(ASP44) (ILE54) H5
(ILE54) (HIS59) E6
(GLY60) (VAL65) E7
(VAL66) (LYS74) E8
(ARG78) (THR88) E9
(HIS89) (ARG97) H10
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 157.2° E2
E3 -50.3° 151.4° E3
E4 -87.1° 115.2° 43.4° E4
H5 -66.9° 91.8° -116.8° 138.3° H5
E6 -85.0° 75.2° -133.0° 138.1° -19.5° E6
E7 125.0° -71.9° 80.7° -66.5° -155.2° 146.0° E7
E8 -148.7° 54.1° 98.8° -62.6° 141.9° 122.5° -37.3° E8
E9 54.1° -103.3° -104.1° 137.4° -18.1° -37.2° 147.8° 157.1° E9
H10 -74.2° -125.6° 43.0° -20.2° 118.1° 119.9° -86.7° -78.5° 118.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1qhta1 : (ASP4) (ARG97) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of family B DNA polymerases |Thermococcus sp., 9on-7 [TaxId: 35749]
d2vwja1 : (ASP4) (HIS103) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Thermococcus gorgonarius [TaxId: 71997]
d4k8za1 : (ASP4) (ILE96) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Thermococcus kodakarensis [TaxId: 69014]
d1qqca1 : (ASP4) (ILE96) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of family B DNA polymerases |Desulfurococcus tok [TaxId: 108142]
d1d5aa1 : (ASP4) (HIS103) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of family B DNA polymerases |Desulfurococcus tok [TaxId: 108142]
d1tgoa1 : (ASP4) (ARG97) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of family B DNA polymerases |Thermococcus gorgonarius [TaxId: 71997]
d2jgua1 : (ASP4) (HIS103) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Pyrococcus furiosus [TaxId: 2261]
d1wn7a1 : (ASP4) (HIS103) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of family B DNA polymerases |Pyrococcus kodakaraensis [TaxId: 311400]
d1wnsa1 : (ASP4) (ALA95) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of family B DNA polymerases |Pyrococcus kodakaraensis [TaxId: 311400]
d2vwka1 : (ASP4) (HIS103) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Thermococcus gorgonarius [TaxId: 71997]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.55