Protein Concepts Dictionary

Tableau information

Concept source:  d2hr6a_  amino acid (a.a.) range (ALA29)(GLU129)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: EEEEEHEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ALA29)   (ASN38) E1
	   (ASP39)   (PRO45) E2
	   (GLY46)   (GLY54) E3
	   (GLY54)   (ALA60) E4
	   (SER63)   (MET68) E5
	   (ARG71)   (GLY79) H6
	   (LEU85)   (ASP90) E7
	   (LEU97)  (ASN103) E8
	  (ASP107)  (PRO113) E9
	  (ILE117)  (GLU129) E10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                    
E2      111.1°   E2                                                             
E3       93.3° -153.0°   E3                                                      
E4     -142.0°  -78.3°  -75.2°   E4                                               
E5      -56.3°  -80.5°  124.5°  156.7°   E5                                        
H6       64.1°  -50.6°  156.3° -126.8°   37.5°   H6                                 
E7       98.9°  126.8°  -33.1°  -52.7°  150.6°  150.5°   E7                          
E8      -84.6°  -44.4°  155.6°  120.2°  -36.9°  -26.1°  171.0°   E8                   
E9      -84.2°  158.0°   10.1°   80.1°  121.5°  148.2°  -31.9° -157.0°   E9            
E10     120.5°   72.7°  -85.1°  -24.6°  149.2° -111.8°  -54.2°  116.9°  -86.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3mbqb_ :    (ASP36)  (LYS134)   [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Brucella melitensis [TaxId: 359391]
 d2hr6a_ :    (ALA29)  (GLU129)   [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) |Escherichia coli [TaxId: 562]
 d1syla_ :    (ASP32)  (GLU129)   [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) |Escherichia coli [TaxId: 562]
 d3mbqa_ :    (ASP36)  (LYS134)   [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Brucella melitensis [TaxId: 359391]
 d4lhra_ :    (ALA25)  (THR125)   [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |automated matches |Burkholderia thailandensis [TaxId: 271848]
 d3hhql_ :    (ASP32)  (VAL121)   [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d3tqza_ :    (ASP32)  (GLN129)   [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |automated matches |Coxiella burnetii [TaxId: 777]
 d3c3ib_ :    (TYR26)  (GLY119)   [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Paramecium bursaria chlorella virus il3a [TaxId: 46019]
 d4gk6a_ :    (VAL23)  (GLU119)   [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |automated matches |Mycobacterium abscessus [TaxId: 561007]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.85