Protein Concepts Dictionary

Tableau information

Concept source:  d1oaxh_  amino acid (a.a.) range (VAL2)(TYR102)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (VAL2)    (SER7) E1
	    (GLY8)   (PRO14) E2
	   (ALA16)   (GLY26) E3
	   (HIS35)   (PRO41) E4
	   (GLY44)   (ASN54) E5
	   (GLY55)   (ASN61) E6
	   (LYS67)   (ASP73) E7
	   (ALA79)   (SER84) E8
	   (THR87)   (VAL93) H9
	   (VAL93)  (TYR102) E10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                    
E2       39.8°   E2                                                             
E3      157.9° -161.0°   E3                                                      
E4      -57.4°  -72.9°  120.3°   E4                                               
E5      112.2°  108.2°  -63.5°  163.2°   E5                                        
E6      -69.2°  -61.4°  121.7°  -31.5°  163.2°   E6                                 
E7      126.2°  142.2°  -37.4°  136.2°  -36.2°  156.3°   E7                          
E8      -27.4°  -21.0°  171.1°  -53.1°  124.8°  -49.4°  151.3°   E8                   
H9     -138.9° -176.4°   21.3°  103.5°  -75.4°  115.2°  -41.1° -155.8°   H9            
E10     151.4°  116.3°  -44.8°  143.1°  -52.2°  118.3°  -58.5°  135.5°   66.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.9°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4krmb_ :     (GLN1)  (ALA100)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
 d2gkia1 :    (VAL24)  (ARG120)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d1orsb1 :     (VAL2)   (CYS96)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
 d1fnsh1 :   (VAL216)  (ASP315)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 5 [TaxId: 10090]
 d1ap2d_ :     (GLN3)  (GLU100)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 3.1 [TaxId: 10090]
 d2z31a_ :     (ASP1)  (TYR100)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d3gm0a1 :     (GLU9)  (ASP107)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d1mf2h1 :     (VAL2)   (GLU99)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
 d4odxa_ :     (GLN1)   (THR98)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1zglp1 :     (VAL4)   (LEU96)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |T-cell antigen receptor |Human (Homo sapiens), beta-chain [TaxId: 9606]
 d2xtjd_ :     (GLN3)  (TYR107)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3rgva1 :     (ASP1)   (SER93)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d1ymme1 :     (GLY1)   (ARG97)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |T-cell antigen receptor |Human (Homo sapiens), beta-chain [TaxId: 9606]
 d1dqjb1 :     (GLU1)   (SER97)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 7.2 [TaxId: 10090]
 d1wc7b1 :     (VAL2)   (ARG94)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 1 [TaxId: 10090]
 d1tjgh1 :     (ILE2)   (PRO98)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Engineered (including hybrid species)
 d1etzb1 :     (VAL2)  (TYR105)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 6 [TaxId: 10090]
 d2dtgd1 :     (ASP1)   (GLN90)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Mouse (Mus musculus), cluster 4 [TaxId: 10090]
 d4ozhe1 :     (MET2)  (GLY109)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1nfda1 :     (ASP1)   (GLY99)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |T-cell antigen receptor |Mouse (Mus musculus), alpha-chain [TaxId: 10090]
 d1f58h1 :     (ASP1)   (ALA97)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.1