Protein Concepts Dictionary

Tableau information

Concept source:  d2ofaa_  amino acid (a.a.) range (GLY8)(ARG120)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLY8)   (ASN12) E1
	   (SER16)   (ALA22) E2
	   (GLY27)   (VAL37) E3
	   (SER47)   (ARG56) E4
	   (PHE62)   (TRP68) E5
	   (SER73)   (GLY79) E6
	   (GLN80)   (ASP84) E7
	   (LYS88)  (SER100) E8
	  (ASP103)  (ALA110) H9
	  (ALA110)  (ARG120) E10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                    
E2      156.7°   E2                                                             
E3      -37.8°  165.2°   E3                                                      
E4      108.1°  -56.4°  134.8°   E4                                               
E5      -74.8°  119.9°  -49.2°  175.8°   E5                                        
E6      103.1°  -68.7°  118.7°  -21.5°  161.8°   E6                                 
E7       94.7°  -93.6°   85.5°  -65.4°  117.8°   44.1°   E7                          
E8      -68.6°  107.2°  -72.8°  131.9°  -45.9°  150.7°  158.2°   E8                   
H9       85.7°  -98.3°   83.9°  -59.9°  123.8°  -38.6°   12.9°  153.8°   H9            
E10     122.1°  -70.3°  104.0°  -65.5°  115.8°  -49.5°  -28.0°  158.7°  -39.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4jhqa_ :     (GLY8)  (ARG122)   [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
 d1wbib_ :     (GLY8)  (ARG120)   [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
 d1swna_ :    (GLY19)  (LYS132)   [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |Streptavidin |Streptomyces avidinii [TaxId: 1895]
 d2a5ba_ :     (GLY8)  (ARG122)   [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
 d2cama_ :     (GLY8)  (ARG122)   [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |Avidin |Chicken (Gallus gallus) [TaxId: 9031]
 d1y52x_ :     (GLY8)  (ARG120)   [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
 d2ofab_ :   (GLY208)  (ARG320)   [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
 d1nqmd_ :   (GLY619)  (LYS732)   [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |Streptavidin |Streptomyces avidinii [TaxId: 1895]
 d1wbih_ :     (GLY8)  (ARG120)   [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
 d2c1sa_ :     (GLY8)  (ARG123)   [view usage] : b.61.1.0 |Streptavidin-like |Avidin/streptavidin |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
 d1wbia_ :     (GLY8)  (ARG120)   [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
 d2a5ca_ :     (GLY8)  (ARG122)   [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
 d1wbic_ :     (GLY8)  (ARG120)   [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
 d2ofaa_ :     (GLY8)  (ARG120)   [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |automated matches |Chicken (Gallus gallus) [TaxId: 9031]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.61