Protein Concepts Dictionary

Tableau information

Concept source:  d1gvmd_  amino acid (a.a.) range (ARG219)(LYS318)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ARG219)  (HIS223) E1
	  (ASN227)  (ASP232) E2
	  (GLY240)  (ALA245) E3
	  (LYS247)  (ASN252) E4
	  (GLY260)  (LYS265) E5
	  (THR267)  (ASP272) E6
	  (ALA282)  (SER286) E7
	  (THR290)  (LYS296) E8
	  (PRO305)  (PRO311) E9
	  (LEU314)  (LYS318) E10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                    
E2      157.1°   E2                                                             
E3     -124.4°   70.9°   E3                                                      
E4       43.3° -115.6°  156.8°   E4                                               
E5      114.6°  -54.8° -120.9°   76.2°   E5                                        
E6      -80.0°  105.9°   48.3° -110.1°  159.0°   E6                                 
E7       15.8° -152.9°  136.0°  -38.8° -101.4°   94.9°   E7                          
E8      151.5°   -5.6°  -74.5°  110.6°   53.5° -106.3°  148.6°   E8                   
E9     -106.8°   95.1°   36.6° -149.1°  123.3°  -61.2° -110.3°  100.3°   E9            
E10      92.8°  -67.5° -136.8°   49.5°   34.1° -136.6°   85.4°  -63.2°  156.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.4°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1gvma_ :   (ASP218)  (LYS318)   [view usage] : b.109.1.1 |beta-hairpin stack |Cell wall binding repeat |Cell wall binding repeat |Choline binding domain of autolysin C-LytA |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
 d1gvmb_ :   (ASP218)  (LYS318)   [view usage] : b.109.1.1 |beta-hairpin stack |Cell wall binding repeat |Cell wall binding repeat |Choline binding domain of autolysin C-LytA |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
 d1gvmf_ :   (ASP218)  (LYS318)   [view usage] : b.109.1.1 |beta-hairpin stack |Cell wall binding repeat |Cell wall binding repeat |Choline binding domain of autolysin C-LytA |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
 d4iwta_ :   (ARG219)  (LYS318)   [view usage] : b.109.1.1 |beta-hairpin stack |Cell wall binding repeat |Cell wall binding repeat |Choline binding domain of autolysin C-LytA |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
 d2bmlb_ :   (ARG219)  (LYS318)   [view usage] : b.109.1.1 |beta-hairpin stack |Cell wall binding repeat |Cell wall binding repeat |automated matches |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
 d2biba1 :   (GLN357)  (ASP449)   [view usage] : b.109.1.1 |beta-hairpin stack |Cell wall binding repeat |Cell wall binding repeat |Teichoic acid phosphorylcholine esterase Pce (LytD), C-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
 d1gvmd_ :   (ARG219)  (LYS318)   [view usage] : b.109.1.1 |beta-hairpin stack |Cell wall binding repeat |Cell wall binding repeat |Choline binding domain of autolysin C-LytA |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 b.109