Protein Concepts Dictionary

Tableau information

Concept source:  d2ri4c_  amino acid (a.a.) range (ALA4)(THR137)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ALA4)   (GLY18) H1
	   (GLY22)   (PRO37) H2
	   (PRO37)   (PHE43) H3
	   (SER52)   (VAL70) H4
	   (VAL70)   (ASP75) H5
	   (ASP75)   (LEU80) H6
	   (LEU80)   (ARG92) H7
	   (ASN97)  (HIS112) H8
	  (PRO119)  (THR137) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                             
H2      101.4°   H2                                                      
H3      -75.7° -112.5°   H3                                               
H4     -142.4°  115.2°   97.1°   H4                                        
H5      153.8°  -76.6°   80.9°   52.1°   H5                                 
H6       36.2°  -86.8°  -51.6°  148.1°  118.1°   H6                          
H7       86.3°  -20.7°   95.3° -131.3°  -84.1°  -66.5°   H7                   
H8       60.8°  125.0° -111.8°  -89.6° -141.5°   96.4°  128.1°   H8            
H9      -95.9°  -75.8°   39.3°  101.2°   58.1°  -60.1°  -63.1°  149.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3hrwa_ :     (SER3)  (SER138)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d1y7gb_ :     (THR4)  (ALA142)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, beta-chain |Human (Homo sapiens) [TaxId: 9606]
 d1outa_ :     (THR3)  (ALA138)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Rainbow trout (Oncorhynchus mykiss) [TaxId: 8022]
 d3goua_ :     (SER3)  (LEU136)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Hemoglobin, alpha-chain |Dog (Canis familiaris) [TaxId: 9615]
 d2ri4c_ :     (ALA4)  (THR137)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Goat (Capra hircus) [TaxId: 9925]
 d2raoa_ :     (SER3)  (LEU136)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
 d3d4xa_ :     (SER3)  (SER138)   [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |automated matches |Cat (Felis catus) [TaxId: 9685]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   a.1