Protein Concepts Dictionary

Tableau information

Concept source:  d2ylja_  amino acid (a.a.) range (THR3)(PHE172)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (THR3)   (CYS11) H1
	   (ASN13)   (ASP29) H2
	   (ILE32)   (VAL46) H3
	   (ALA67)   (ALA71) H4
	   (PRO78)   (ALA90) H5
	   (SER96)  (GLY113) H6
	  (PHE130)  (ALA136) H7
	  (THR144)  (GLY156) H8
	  (SER160)  (PHE172) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                             
H2       94.3°   H2                                                      
H3      113.8°  125.9°   H3                                               
H4      -60.3°   46.6° -166.1°   H4                                        
H5       56.2°  147.0°  -83.3°  101.3°   H5                                 
H6     -104.3°  -57.1° -140.7°   49.6°  112.0°   H6                          
H7     -140.8°  -66.9°  104.8°   83.4°  125.3°  -36.5°   H7                   
H8       55.7°  148.2°   67.5° -112.8°  -22.4° -134.3° -142.6°   H8            
H9      -50.0°  -46.7° -149.2°  -17.4°  100.5°   66.2°  -97.9°  105.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1gwta_ :     (THR3)  (PHE172)   [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Plant peroxidase |Horseradish (Armoracia rusticana) [TaxId: 3704]
 d2atja_ :     (THR3)  (PHE172)   [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Plant peroxidase |Horseradish (Armoracia rusticana) [TaxId: 3704]
 d1fhfa_ :     (TYR7)  (THR170)   [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Plant peroxidase |Soybean (Glycine max) [TaxId: 3847]
 d4atja_ :     (THR3)  (VAL164)   [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Plant peroxidase |Horseradish (Armoracia rusticana) [TaxId: 3704]
 d2ylja_ :     (THR3)  (PHE172)   [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Plant peroxidase |Horseradish (Armoracia rusticana) [TaxId: 3704]
 d1gx2a_ :     (THR3)  (PHE172)   [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Plant peroxidase |Horseradish (Armoracia rusticana) [TaxId: 3704]
 d1gw2a_ :     (THR3)  (PHE172)   [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Plant peroxidase |Horseradish (Armoracia rusticana) [TaxId: 3704]
 d1gwua_ :     (THR3)  (PHE172)   [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Plant peroxidase |Horseradish (Armoracia rusticana) [TaxId: 3704]
 d7atja_ :     (THR3)  (PHE172)   [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Plant peroxidase |Horseradish (Armoracia rusticana) [TaxId: 3704]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  a.93