Protein Concepts Dictionary

Tableau information

Concept source:  d3v09a3  amino acid (a.a.) range (ASN391)(ALA561)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ASN391)  (GLN397) H1
	  (ASP400)  (VAL415) H2
	  (THR420)  (LYS436) H3
	  (PRO441)  (THR467) H4
	  (GLU471)  (CYS477) H5
	  (ARG484)  (LEU491) H6
	  (ALA511)  (PRO517) H7
	  (PRO517)  (HIS535) H8
	  (THR540)  (ALA561) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                             
H2      131.5°   H2                                                      
H3      -92.3°  134.1°   H3                                               
H4       89.0°  -48.0°  170.3°   H4                                        
H5     -123.3°  102.4°   47.0° -125.1°   H5                                 
H6       62.4°   85.0° -109.9°   79.2°  152.9°   H6                          
H7      -99.3°  128.4°  -25.4°  145.0°   26.9° -134.6°   H7                   
H8      122.7°  -31.4°  118.8°  -68.0°  112.4°   62.1°  129.8°   H8            
H9      -38.2°  124.3°  -97.8°   77.3° -100.9°   96.0°  -88.4°  141.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.4°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1kw2a2 :   (LEU215)  (VAL378)   [view usage] : a.126.1.1 |Serum albumin-like |Serum albumin-like |Serum albumin-like |Vitamin D binding protein |Human (Homo sapiens) [TaxId: 9606]
 d3v03a3 :   (LYS388)  (ALA560)   [view usage] : a.126.1.0 |Serum albumin-like |Serum albumin-like |automated matches |automated matches |Cow (Bos taurus) [TaxId: 9913]
 d4k71a3 :   (LYS389)  (ALA561)   [view usage] : a.126.1.1 |Serum albumin-like |Serum albumin-like |Serum albumin-like |Serum albumin |Human (Homo sapiens) [TaxId: 9606]
 d2xvub3 :   (LYS389)  (ALA561)   [view usage] : a.126.1.1 |Serum albumin-like |Serum albumin-like |Serum albumin-like |Serum albumin |Human (Homo sapiens) [TaxId: 9606]
 d1kw2a1 :    (ASP22)  (SER192)   [view usage] : a.126.1.1 |Serum albumin-like |Serum albumin-like |Serum albumin-like |Vitamin D binding protein |Human (Homo sapiens) [TaxId: 9606]
 d3v08a3 :   (LYS388)  (ARG560)   [view usage] : a.126.1.0 |Serum albumin-like |Serum albumin-like |automated matches |automated matches |Horse (Equus caballus) [TaxId: 9796]
 d1j78a2 :   (LEU199)  (VAL362)   [view usage] : a.126.1.1 |Serum albumin-like |Serum albumin-like |Serum albumin-like |Vitamin D binding protein |Human (Homo sapiens) [TaxId: 9606]
 d1ao6a2 :   (ARG197)  (ALA363)   [view usage] : a.126.1.1 |Serum albumin-like |Serum albumin-like |Serum albumin-like |Serum albumin |Human (Homo sapiens) [TaxId: 9606]
 d3v09a3 :   (ASN391)  (ALA561)   [view usage] : a.126.1.0 |Serum albumin-like |Serum albumin-like |automated matches |automated matches |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
 d1kw2b1 :    (TYR23)  (SER192)   [view usage] : a.126.1.1 |Serum albumin-like |Serum albumin-like |Serum albumin-like |Vitamin D binding protein |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 a.126