Protein Concepts Dictionary

Tableau information

Concept source:  d2o1oa_  amino acid (a.a.) range (THR26)(GLU228)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (THR26)   (LEU43) H1
	   (PRO55)   (LYS70) H2
	   (ILE74)   (SER86) H3
	   (ASN91)  (ASP119) H4
	  (CYS129)  (HIS134) H5
	  (GLN136)  (GLY162) H6
	  (ASN163)  (SER189) H7
	  (LYS198)  (LYS210) H8
	  (SER212)  (GLU228) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                             
H2      158.7°   H2                                                      
H3      107.1°  -76.5°   H3                                               
H4      -78.2°   89.1°  152.0°   H4                                        
H5      -38.8°  151.7° -128.2°  -73.3°   H5                                 
H6      102.8°  -83.3°   -8.8° -160.0°  120.1°   H6                          
H7      -94.8°   74.3°  146.7°  -16.8°  -84.4°  155.2°   H7                   
H8       68.7° -130.0°  -67.7°  136.6°   63.4°   59.0° -145.3°   H8            
H9       88.7° -102.3°  -30.8°  166.5°   98.6°   22.0°  176.5°  -37.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4lfga_ :     (LYS3)  (GLN189)   [view usage] : a.128.1.0 |Terpenoid synthases |Terpenoid synthases |automated matches |automated matches |Streptococcus uberis [TaxId: 218495]
 d1v4ha_ :    (LEU13)  (GLN176)   [view usage] : a.128.1.1 |Terpenoid synthases |Terpenoid synthases |Isoprenyl diphosphate synthases |Octoprenyl-diphosphate synthase |Thermotoga maritima [TaxId: 2336]
 d2ewga_ :     (MET1)  (GLU230)   [view usage] : a.128.1.0 |Terpenoid synthases |Terpenoid synthases |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
 d4lfeb_ :     (LYS3)  (GLN189)   [view usage] : a.128.1.0 |Terpenoid synthases |Terpenoid synthases |automated matches |automated matches |Streptococcus uberis [TaxId: 218495]
 d1vg3a_ :     (ASN9)  (LEU175)   [view usage] : a.128.1.1 |Terpenoid synthases |Terpenoid synthases |Isoprenyl diphosphate synthases |Octoprenyl-diphosphate synthase |Thermotoga maritima [TaxId: 2336]
 d2o1oa_ :    (THR26)  (GLU228)   [view usage] : a.128.1.0 |Terpenoid synthases |Terpenoid synthases |automated matches |automated matches |Cryptosporidium parvum [TaxId: 5807]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 a.128