Tableau information
Concept source: d3p9ia1 amino acid (a.a.) range (ALA5)(THR113)
nSSEs in this Concept: 9
String of secondary struct.elems. (SSEs) defining this concept: HHHEHHEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA5) (ALA24) H1
(SER25) (GLY40) H2
(GLY40) (ALA48) H3
(GLY50) (THR54) E4
(THR54) (ALA60) H5
(ALA70) (ASN85) H6
(THR88) (GLU93) E7
(GLY97) (TYR103) E8
(VAL108) (THR113) H9
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 47.4° H2
H3 -111.6° -65.2° H3
E4 84.2° 101.8° 123.4° E4
H5 -13.2° 52.3° 112.0° 94.6° H5
H6 -126.2° -120.4° -76.3° -137.6° 113.1° H6
E7 116.8° 104.1° 85.8° -42.0° -129.7° -116.8° E7
E8 -57.4° -56.5° -79.3° 141.4° 46.9° 73.6° 159.3° E8
H9 -10.3° -57.6° -121.8° 79.4° -15.2° 124.9° 116.1° -62.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.3° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3p9ca1 : (SER11) (THR113) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Lolium perenne [TaxId: 4522]
d4pghd1 : (ASP7) (THR113) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Sorghum (Sorghum bicolor) [TaxId: 4558]
d3p9ia1 : (ALA5) (THR113) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Lolium perenne [TaxId: 4522]
d4pgha1 : (ALA9) (THR113) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Sorghum (Sorghum bicolor) [TaxId: 4558]
d3p9ib1 : (ALA12) (THR113) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Lolium perenne [TaxId: 4522]
d3p9id1 : (ALA10) (THR113) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Lolium perenne [TaxId: 4522]
d1kywf1 : (ALA19) (LEU115) [view usage] : a.4.5.29 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Plant O-methyltransferase, N-terminal domain |Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase |Alfalfa (Medicago sativa) [TaxId: 3879]
d4pghc1 : (ALA12) (THR113) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Sorghum (Sorghum bicolor) [TaxId: 4558]
d3reob1 : (SER17) (THR119) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Clarkia breweri [TaxId: 36903]
d3reoa1 : (SER17) (THR119) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Clarkia breweri [TaxId: 36903]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
a.4