Protein Concepts Dictionary

Tableau information

Concept source:  d3gp5a_  amino acid (a.a.) range (LEU152)(VAL241)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: HHHEHHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (LEU152)  (ARG158) H1
	  (LEU160)  (GLU165) H2
	  (ILE167)  (ALA173) H3
	  (GLN176)  (ALA181) E4
	  (GLY183)  (LEU193) H5
	  (SER197)  (GLY203) H6
	  (VAL210)  (LEU216) E7
	  (ILE223)  (TYR227) E8
	  (GLN231)  (VAL241) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                             
H2      -19.7°   H2                                                      
H3      -53.2°  -35.7°   H3                                               
E4      144.1°  163.9° -156.4°   E4                                        
H5      -72.5°  -59.2°  -62.3°  129.8°   H5                                 
H6      100.3°  102.0°   83.2°  -77.8°  141.9°   H6                          
E7      -59.2°  -51.2°  -67.5°  131.6°   19.5°  150.4°   E7                   
E8      114.2°  121.0°  105.1°  -56.4° -159.5°  -21.9°  172.0°   E8            
H9      121.7°  137.4° -170.8°   32.2° -109.6°  105.8° -103.3°   83.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4eo9a_ :   (LEU155)  (GLN244)   [view usage] : c.60.1.0 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |automated matches |automated matches |Mycobacterium leprae [TaxId: 561304]
 d2h4xa_ :   (LEU158)  (GLN251)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2a9jb_ :   (LEU158)  (GLN251)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4embb_ :   (LEU157)  (SER245)   [view usage] : c.60.1.0 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |automated matches |automated matches |Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
 d4odic_ :   (LEU169)  (ALA257)   [view usage] : c.60.1.0 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |automated matches |automated matches |Toxoplasma gondii [TaxId: 508771]
 d1xq9a_ :   (LEU162)  (LYS247)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |Phosphoglycerate mutase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
 d4odib_ :   (LEU169)  (ALA259)   [view usage] : c.60.1.0 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |automated matches |automated matches |Toxoplasma gondii [TaxId: 508771]
 d2h4zb_ :   (LEU158)  (GLN251)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3gp5a_ :   (LEU152)  (VAL241)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Burkholderia pseudomallei [TaxId: 28450]
 d1e59a_ :   (SER152)  (ALA240)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |Phosphoglycerate mutase |Escherichia coli [TaxId: 562]
 d2f90a_ :   (LEU158)  (LYS253)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2a9ja_ :   (LEU158)  (LYS253)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4emba_ :   (LEU157)  (GLN249)   [view usage] : c.60.1.0 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |automated matches |automated matches |Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
 d4embc_ :   (LEU157)  (SER248)   [view usage] : c.60.1.0 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |automated matches |automated matches |Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.60