Protein Concepts Dictionary

Tableau information

Concept source:  d4e5ed_  amino acid (a.a.) range (ASP27)(ALA196)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: HHHEHEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ASP27)   (THR32) H1
	   (THR32)   (GLY50) H2
	   (ARG84)   (GLY99) H3
	  (PHE117)  (THR123) E4
	  (VAL127)  (LYS139) H5
	  (HIS144)  (SER149) E6
	  (GLY152)  (ALA156) E7
	  (ASP164)  (GLY186) H8
	  (TRP188)  (ALA196) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                             
H2      -93.1°   H2                                                      
H3      -82.2°   33.1°   H3                                               
E4      -53.1°  135.1° -135.3°   E4                                        
H5      142.6°  -78.7°  -71.0°  146.2°   H5                                 
E6      -58.4°  126.1°  137.2°  -14.7°  151.5°   E6                          
E7      115.5°  -65.7°  -46.4°  150.2°  -28.3°  164.9°   E7                   
H8      -82.5°  160.1° -160.7°  -31.5°  116.2°  -36.4°  133.6°   H8            
H9      104.2°  -95.3°  -67.9° -119.0°   41.9° -133.3°   31.8°  104.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4e5ea_ :    (ASP27)  (ALA196)   [view usage] : c.52.1.34 |Restriction endonuclease-like |Restriction endonuclease-like |PA N-terminal domain |PA N-terminal domain |Influenza A virus [TaxId: 93838]
 d4e5ec_ :    (PRO11)  (LEU196)   [view usage] : c.52.1.34 |Restriction endonuclease-like |Restriction endonuclease-like |PA N-terminal domain |PA N-terminal domain |Influenza A virus [TaxId: 93838]
 d3ebjb_ :    (ASP27)  (GLU195)   [view usage] : c.52.1.34 |Restriction endonuclease-like |Restriction endonuclease-like |PA N-terminal domain |PA N-terminal domain |Influenza A virus [TaxId: 93838]
 d4e5lb_ :    (PRO11)  (ALA196)   [view usage] : c.52.1.34 |Restriction endonuclease-like |Restriction endonuclease-like |PA N-terminal domain |PA N-terminal domain |Influenza A virus [TaxId: 93838]
 d2w69b_ :    (PRO11)  (SER194)   [view usage] : c.52.1.34 |Restriction endonuclease-like |Restriction endonuclease-like |PA N-terminal domain |automated matches |Influenza A virus [TaxId: 11320]
 d4e5ed_ :    (ASP27)  (ALA196)   [view usage] : c.52.1.34 |Restriction endonuclease-like |Restriction endonuclease-like |PA N-terminal domain |PA N-terminal domain |Influenza A virus [TaxId: 93838]
 d4ln7a_ :    (ASP27)  (SER194)   [view usage] : c.52.1.34 |Restriction endonuclease-like |Restriction endonuclease-like |PA N-terminal domain |PA N-terminal domain |Influenza a virus (a/lima/wrair1695p/2009(h1n1)) [TaxId: 985958]
 d4m5qa_ :    (ASP27)  (SER194)   [view usage] : c.52.1.34 |Restriction endonuclease-like |Restriction endonuclease-like |PA N-terminal domain |PA N-terminal domain |Influenza a virus (a/lima/wrair1695p/2009(h1n1)) [TaxId: 985958]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.52