Protein Concepts Dictionary

Tableau information

Concept source:  d2dv1a2  amino acid (a.a.) range (ALA613)(ASN741)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: HHHEEEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ALA613)  (THR625) H1
	  (SER627)  (GLY642) H2
	  (ASN662)  (ASP670) H3
	  (GLY672)  (PRO677) E4
	  (VAL684)  (ASP689) E5
	  (LYS696)  (THR700) E6
	  (THR700)  (SER708) H7
	  (SER710)  (SER721) H8
	  (ALA724)  (ASN741) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                             
H2      110.1°   H2                                                      
H3     -151.1°   96.6°   H3                                               
E4      101.2°   92.2°  -88.1°   E4                                        
E5     -101.1°  -77.3°   73.6°  157.5°   E5                                 
E6       70.3°  128.3° -101.9°  -41.5°  154.3°   E6                          
H7      -83.8° -129.7°  -70.4° -133.6°   52.4° -102.0°   H7                   
H8       70.1°  -58.5° -118.4°  140.7°  -47.7°  138.8°  -84.7°   H8            
H9       67.3°  -98.2°  120.7°   34.4° -165.6°   31.9°  130.7° -118.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3vlmb2 :   (ALA596)  (PHE728)   [view usage] : a.93.1.0 |Heme-dependent peroxidases |Heme-dependent peroxidases |automated matches |automated matches |Haloarcula marismortui [TaxId: 272569]
 d1sj2a2 :   (ALA606)  (ASN733)   [view usage] : a.93.1.3 |Heme-dependent peroxidases |Heme-dependent peroxidases |Catalase-peroxidase KatG |Catalase-peroxidase KatG |Mycobacterium tuberculosis [TaxId: 1773]
 d3ut2a2 :   (ARG647)  (ASN776)   [view usage] : a.93.1.0 |Heme-dependent peroxidases |Heme-dependent peroxidases |automated matches |automated matches |Magnaporthe oryzae [TaxId: 242507]
 d3wnua2 :   (PRO587)  (ASN713)   [view usage] : a.93.1.0 |Heme-dependent peroxidases |Heme-dependent peroxidases |automated matches |automated matches |Synechococcus elongatus [TaxId: 1140]
 d2dv1a2 :   (ALA613)  (ASN741)   [view usage] : a.93.1.3 |Heme-dependent peroxidases |Heme-dependent peroxidases |Catalase-peroxidase KatG |Catalase-peroxidase KatG |Burkholderia pseudomallei [TaxId: 28450]
 d1mwva2 :   (ALA613)  (ASN741)   [view usage] : a.93.1.3 |Heme-dependent peroxidases |Heme-dependent peroxidases |Catalase-peroxidase KatG |Catalase-peroxidase KatG |Burkholderia pseudomallei [TaxId: 28450]
 d1u2la_ :   (THR590)  (ASN719)   [view usage] : a.93.1.3 |Heme-dependent peroxidases |Heme-dependent peroxidases |Catalase-peroxidase KatG |Catalase-peroxidase KatG |Burkholderia pseudomallei [TaxId: 28450]
 d3ut2b2 :   (ARG647)  (ASN776)   [view usage] : a.93.1.0 |Heme-dependent peroxidases |Heme-dependent peroxidases |automated matches |automated matches |Magnaporthe oryzae [TaxId: 242507]
 d2ccaa2 :   (ALA606)  (ASN733)   [view usage] : a.93.1.0 |Heme-dependent peroxidases |Heme-dependent peroxidases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
 d1itka2 :   (ALA596)  (LYS724)   [view usage] : a.93.1.3 |Heme-dependent peroxidases |Heme-dependent peroxidases |Catalase-peroxidase KatG |Catalase-peroxidase KatG |Haloarcula marismortui [TaxId: 2238]
 d1cyfa_ :   (ASN164)  (GLU271)   [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Cytochrome c peroxidase, CCP |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1u2ka_ :   (THR605)  (ASN719)   [view usage] : a.93.1.3 |Heme-dependent peroxidases |Heme-dependent peroxidases |Catalase-peroxidase KatG |Catalase-peroxidase KatG |Burkholderia pseudomallei [TaxId: 28450]
 d1ub2a2 :   (ARG586)  (ASN713)   [view usage] : a.93.1.3 |Heme-dependent peroxidases |Heme-dependent peroxidases |Catalase-peroxidase KatG |Catalase-peroxidase KatG |Synechococcus elongatus PCC 7942 [TaxId: 1140]
 d1u2ja_ :   (THR590)  (ASN719)   [view usage] : a.93.1.3 |Heme-dependent peroxidases |Heme-dependent peroxidases |Catalase-peroxidase KatG |Catalase-peroxidase KatG |Burkholderia pseudomallei [TaxId: 28450]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  a.93