Protein Concepts Dictionary

Tableau information

Concept source:  d1pxra_  amino acid (a.a.) range (TRP10)(SER226)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: HHEEHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (TRP10)   (VAL34) H1
	   (ASP36)   (GLY63) H2
	   (GLY65)   (PHE71) E3
	   (ASN76)   (ALA81) E4
	   (ALA81)  (ASP102) H5
	  (ASP104)  (THR128) H6
	  (VAL130)  (MET163) H7
	  (VAL167)  (ILE191) H8
	  (PRO200)  (SER226) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                             
H2     -158.4°   H2                                                      
E3      136.8°  -61.1°   E3                                               
E4      -14.2°  144.7°  149.9°   E4                                        
H5       34.5° -165.7° -111.3°   47.0°   H5                                 
H6     -161.6°   -4.0°   59.5° -147.6°  161.7°   H6                          
H7       26.6° -161.4° -128.5°   34.9°   17.9° -159.2°   H7                   
H8     -159.5°   18.2°  -46.4° -151.8° -157.7°   19.1° -173.3°   H8            
H9       10.4° -164.5°  134.4°  -21.1°   25.9° -165.9°   16.2° -169.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1fbka_ :    (LEU13)  (ARG227)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]
 d3t45a_ :     (GLU9)  (SER226)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |automated matches |Halobacterium sp. [TaxId: 64091]
 d3hara_ :    (TRP10)  (LYS216)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |automated matches |Halobacterium salinarum [TaxId: 2242]
 d2z55d_ :    (ARG11)  (SER231)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |automated matches |Halobacterium sp. [TaxId: 29285]
 d1s52a_ :    (TRP10)  (SER226)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]
 d3coda_ :    (TRP10)  (SER226)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]
 d1q5ja_ :    (TRP10)  (SER226)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]
 d4hyxa_ :    (TRP10)  (LYS216)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |automated matches |Halobacterium salinarum [TaxId: 2242]
 d1fbba_ :    (LEU13)  (SER226)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]
 d1iw6a_ :     (GLU9)  (LYS216)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]
 d1bm1a_ :     (GLU9)  (ARG225)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium halobium [TaxId: 2242]
 d1tn5a_ :    (TRP10)  (SER226)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]
 d1pxra_ :    (TRP10)  (SER226)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]
 d1vgoa_ :    (THR14)  (SER231)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |automated matches |Halobacterium sp. [TaxId: 29285]
 d1s54a_ :    (TRP10)  (SER226)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]
 d3hapa_ :    (TRP10)  (LYS216)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |automated matches |Halobacterium salinarum [TaxId: 2242]
 d3coca_ :    (TRP10)  (SER226)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]
 d1dzea_ :    (ASP36)  (SER226)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]
 d3hana_ :     (ARG7)  (SER226)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |automated matches |Halobacterium salinarum [TaxId: 2242]
 d1brrb_ :     (GLU9)  (SER226)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]
 d1cwqa_ :    (TRP10)  (SER226)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]
 d3utya_ :    (TRP10)  (SER226)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |automated matches |Halobacterium sp. [TaxId: 64091]
 d1brra_ :    (ASP36)  (SER226)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]
 d1pxsa_ :    (TRP10)  (SER226)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]
 d1ap9a_ :     (GLU9)  (ARG225)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]
 d1r2na_ :     (GLU9)  (LYS216)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  f.13