Protein Concepts Dictionary

Tableau information

Concept source:  d3ldsa2  amino acid (a.a.) range (ASN775)(ALA887)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: HEHHEEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ASN775)  (ALA780) H1
	  (ALA780)  (SER784) E2
	  (ASN787)  (ASP792) H3
	  (PRO802)  (LYS816) H4
	  (TYR831)  (GLU837) E5
	  (LYS844)  (PRO849) E6
	  (THR855)  (TRP865) H7
	  (TYR868)  (LYS874) H8
	  (ILE877)  (ALA887) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                             
E2      -44.5°   E2                                                      
H3       88.2°  102.2°   H3                                               
H4     -139.0° -103.0°  -73.9°   H4                                        
E5       97.3°  121.0°   20.2°   78.5°   E5                                 
E6     -100.5°  -66.8° -148.8°  -80.3°  158.6°   E6                          
H7       77.0°  121.5°   70.2°  127.1°   55.4° -140.8°   H7                   
H8       44.0°   60.0°  128.8° -152.1°  128.8°  -72.7°  -80.0°   H8            
H9       55.9°   89.2°  112.5° -165.0°  102.9°  -96.9°  -48.9°  -32.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1q9ya2 :   (LYS772)  (LYS891)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d2dtuc2 :   (ASN775)  (LYS888)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d4fjna2 :   (ASN775)  (LYS888)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3ldsa2 :   (ASN775)  (ALA887)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3suqa2 :   (ASN775)  (LYS888)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d4khna2 :   (ASN775)  (LYS888)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d4j2aa2 :   (ASN775)  (LYS888)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d1ig9a2 :   (ASN775)  (PHE901)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d4j2ba2 :   (ASN775)  (LYS888)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3scxa2 :   (ASN775)  (ASP899)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d4i9la2 :   (ASN775)  (PHE901)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d2dy4c2 :   (ASN775)  (LYS888)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   e.8