Protein Concepts Dictionary

Tableau information

Concept source:  d3op4b_  amino acid (a.a.) range (THR116)(ASN242)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: HEHEHHHHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (THR116)  (LYS132) H1
	  (GLN134)  (VAL140) E2
	  (GLN152)  (VAL173) H3
	  (GLY177)  (PHE187) E4
	  (THR190)  (LEU196) H5
	  (ASP198)  (VAL208) H6
	  (ARG217)  (SER228) H7
	  (PRO229)  (ILE234) H8
	  (GLY236)  (ASN242) E9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                             
E2      163.7°   E2                                                      
H3      -18.4° -166.4°   H3                                               
E4      145.7°  -18.7° -158.4°   E4                                        
H5     -156.5°   11.0° -155.7°  -20.2°   H5                                 
H6      -46.8°  127.1°  -39.9° -122.5°  116.1°   H6                          
H7      -35.4°  156.4°   17.8°  166.9°  149.9°   45.9°   H7                   
H8     -116.7°   71.5°  -99.0°   86.7°   66.4°   79.8°  -84.9°   H8            
E9      124.2°  -40.8°  140.2°  -22.3°  -41.7° -116.1°  157.4°  106.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.2°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1uzna_ :   (THR101)  (ASP240)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d3g1ta_ :   (LEU137)  (GLN246)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Salmonella typhi [TaxId: 601]
 d4m87a_ :   (ALA121)  (ASP249)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Neisseria meningitidis [TaxId: 272831]
 d4ibod_ :   (THR109)  (ASP249)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Agrobacterium fabrum [TaxId: 176299]
 d3oidb_ :   (LEU118)  (ASP243)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
 d3op4b_ :   (THR116)  (ASN242)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Vibrio cholerae [TaxId: 243277]
 d1zmoa_ :   (ILE108)  (THR239)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Arthrobacter sp. [TaxId: 168809]
 d4nbva_ :   (ALA125)  (SER241)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Cupriavidus taiwanensis [TaxId: 164546]
 d2dtda_ :   (ILE116)  (ASP242)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermoplasma acidophilum [TaxId: 2303]
 d4ibob_ :   (THR109)  (ASP249)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Agrobacterium fabrum [TaxId: 176299]
 d2zata_ :   (VAL135)  (GLY253)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Pig (Sus scrofa) [TaxId: 9823]
 d3ijre_ :   (ILE155)  (ASN281)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bacillus anthracis [TaxId: 261594]
 d3op4a_ :   (THR116)  (ASN242)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Vibrio cholerae [TaxId: 243277]
 d2yz7a_ :   (PRO127)  (ASP254)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Alcaligenes faecalis [TaxId: 511]
 d4nr0c_ :   (GLY133)  (ASP251)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Pseudomonas aeruginosa [TaxId: 208964]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.2