Protein Concepts Dictionary

Tableau information

Concept source:  d1sdsc_  amino acid (a.a.) range (PRO10)(LYS116)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: HEHEHEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (PRO10)   (LYS23) H1
	   (GLN25)   (GLY30) E2
	   (GLY30)   (GLY41) H3
	   (LYS44)   (ALA49) E4
	   (LEU61)   (LYS68) H5
	   (ILE70)   (ALA76) E6
	   (LYS78)   (GLY86) H7
	   (SER92)   (ASN98) E8
	  (ALA102)  (LYS116) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                             
E2     -109.2°   E2                                                      
H3       83.8° -117.8°   H3                                               
E4     -121.3°  -46.4° -152.3°   E4                                        
H5       73.6°  136.0°   19.0° -164.7°   H5                                 
E6     -114.4°  -68.9° -158.3°  -22.9° -152.1°   E6                          
H7      -33.9° -142.9°   71.9° -135.4°   54.7°  116.3°   H7                   
E8       60.0°  154.8°   42.5°  158.6°   23.6°  135.8°   33.1°   E8            
H9     -145.2°   42.0°  -94.5°   58.4° -112.1°   77.3° -166.2° -134.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1jj2f_ :     (PRO9)  (ARG119)   [view usage] : d.79.3.1 |Bacillus chorismate mutase-like |L30e-like |L30e/L7ae ribosomal proteins |Ribosomal protein L7ae |Haloarcula marismortui [TaxId: 2238]
 d1rlga_ :     (PRO8)  (LYS119)   [view usage] : d.79.3.1 |Bacillus chorismate mutase-like |L30e-like |L30e/L7ae ribosomal proteins |Ribosomal protein L7ae |Archaeoglobus fulgidus [TaxId: 2234]
 d1sdsb_ :    (PRO10)  (ASN113)   [view usage] : d.79.3.1 |Bacillus chorismate mutase-like |L30e-like |L30e/L7ae ribosomal proteins |Ribosomal protein L7ae |Methanococcus jannaschii [TaxId: 2190]
 d1zwza1 :    (ALA16)  (ILE128)   [view usage] : d.79.3.1 |Bacillus chorismate mutase-like |L30e-like |L30e/L7ae ribosomal proteins |Small nuclear ribonucleoprotein-associated protein 1, Snu13p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1w3ex1 :     (ASP2)   (GLY97)   [view usage] : d.79.3.1 |Bacillus chorismate mutase-like |L30e-like |L30e/L7ae ribosomal proteins |Eukaryotic ribosomal protein L30 (L30e) |Thermococcus celer [TaxId: 2264]
 d1sdsc_ :    (PRO10)  (LYS116)   [view usage] : d.79.3.1 |Bacillus chorismate mutase-like |L30e-like |L30e/L7ae ribosomal proteins |Ribosomal protein L7ae |Methanococcus jannaschii [TaxId: 2190]
 d1s72f_ :     (PRO9)  (LEU118)   [view usage] : d.79.3.1 |Bacillus chorismate mutase-like |L30e-like |L30e/L7ae ribosomal proteins |Ribosomal protein L7ae |Haloarcula marismortui [TaxId: 2238]
 d1s1ig_ :   (LYS119)  (ILE217)   [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1sdsa_ :    (PRO10)  (LYS116)   [view usage] : d.79.3.1 |Bacillus chorismate mutase-like |L30e-like |L30e/L7ae ribosomal proteins |Ribosomal protein L7ae |Methanococcus jannaschii [TaxId: 2190]
 d1pxwa_ :    (PRO17)  (LYS128)   [view usage] : d.79.3.1 |Bacillus chorismate mutase-like |L30e-like |L30e/L7ae ribosomal proteins |Ribosomal protein L7ae |Pyrococcus abyssi [TaxId: 29292]
 d2xzmu_ :     (ASN5)  (LEU124)   [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
 d2hvyd1 :    (PRO13)  (LYS124)   [view usage] : d.79.3.1 |Bacillus chorismate mutase-like |L30e-like |L30e/L7ae ribosomal proteins |Ribosomal protein L7ae |Pyrococcus furiosus [TaxId: 2261]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   i.1,    d.79