Tableau information
Concept source: d1eqpa_ amino acid (a.a.) range (GLN78)(ASN237)
nSSEs in this Concept: 9
String of secondary struct.elems. (SSEs) defining this concept: HEHEHEHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN78) (LEU86) H1
(ASN89) (ILE95) E2
(VAL113) (ASN126) H3
(ARG129) (LEU134) E4
(ASN160) (LYS174) H5
(ILE185) (LEU190) E6
(MET200) (THR217) H7
(PRO222) (HIS226) E8
(VAL231) (ASN237) H9
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 139.1° E2
H3 -37.9° -175.0° H3
E4 123.8° -15.5° 161.7° E4
H5 -79.8° 139.6° -42.3° 154.9° H5
E6 108.3° -34.4° 144.8° -20.7° 170.0° E6
H7 -99.4° 115.3° -65.2° 129.4° -26.8° 149.7° H7
E8 91.1° -61.3° 119.8° -50.3° 147.3° -30.4° 163.1° E8
H9 -102.5° 84.8° -92.1° 91.5° -73.4° 109.5° -51.1° 139.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3p82a_ : (LEU213) (LYS338) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Pentaerythritol tetranirate reductase |Enterobacter cloacae [TaxId: 550]
d1yx1b_ : (GLY22) (GLN153) [view usage] : c.1.15.7 |TIM beta/alpha-barrel |Xylose isomerase-like |KguE-like |Hypothetical protein PA2260 |Pseudomonas aeruginosa [TaxId: 287]
d3l0gb2 : (SER172) (PHE264) [view usage] : c.1.17.0 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |automated matches |automated matches |Ehrlichia chaffeensis [TaxId: 205920]
d2cbia2 : (PRO232) (TYR387) [view usage] : c.1.8.10 |TIM beta/alpha-barrel |(Trans)glycosidases |alpha-D-glucuronidase/Hyaluronidase catalytic domain |Hyaluronidase catalytic domain |Clostridium perfringens [TaxId: 1502]
d1vrxa_ : (THR92) (ASN266) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Endocellulase E1 |Acidothermus cellulolyticus [TaxId: 28049]
d1bqga1 : (THR190) (LEU310) [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |D-glucarate dehydratase |Pseudomonas putida [TaxId: 303]
d1yx1a1 : (GLY22) (GLN153) [view usage] : c.1.15.7 |TIM beta/alpha-barrel |Xylose isomerase-like |KguE-like |Hypothetical protein PA2260 |Pseudomonas aeruginosa [TaxId: 287]
d1q7ma1 : (LYS347) (ASP465) [view usage] : c.1.21.2 |TIM beta/alpha-barrel |Dihydropteroate synthetase-like |Methyltetrahydrofolate-utiluzing methyltransferases |Cobalamin-dependent methionine synthase MetH, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d1vhna_ : (ASP110) (ARG231) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Putative flavin oxidoreducatase TM0096 |Thermotoga maritima [TaxId: 2336]
d2nuwa_ : (LYS109) (GLY214) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Sulfolobus acidocaldarius [TaxId: 330779]
d3t6ca2 : (LEU260) (PHE364) [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |automated matches |Pantoea ananatis [TaxId: 706191]
d3l0ga2 : (SER172) (PHE264) [view usage] : c.1.17.0 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |automated matches |automated matches |Ehrlichia chaffeensis [TaxId: 205920]
d4wgha_ : (ARG31) (THR155) [view usage] : c.1.7.0 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 573]
d3kruc_ : (SER188) (TYR321) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Thermoanaerobacter pseudethanolicus [TaxId: 340099]
d3ru8x_ : (GLU83) (GLY213) [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3krua_ : (SER188) (TYR321) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Thermoanaerobacter pseudethanolicus [TaxId: 340099]
d2o55a_ : (HIS153) (SER256) [view usage] : c.1.18.0 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |automated matches |automated matches |Red algae (Galdieria sulphuraria) [TaxId: 130081]
d3no3a_ : (THR104) (HIS205) [view usage] : c.1.18.0 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |automated matches |automated matches |Parabacteroides distasonis [TaxId: 435591]
d4aiua2 : (ASP182) (ILE330) [view usage] : c.1.8.10 |TIM beta/alpha-barrel |(Trans)glycosidases |alpha-D-glucuronidase/Hyaluronidase catalytic domain |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
d1ecea_ : (THR92) (ASN266) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Endocellulase E1 |Acidothermus cellulolyticus [TaxId: 28049]
d2cita1 : (THR127) (GLY281) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Endoglucanase H N-terminal domain |Clostridium thermocellum [TaxId: 1515]
d4toqa_ : (GLU90) (ILE241) [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |automated matches |Punica granatum [TaxId: 22663]
d1xuua2 : (ASN89) (ARG194) [view usage] : c.1.10.6 |TIM beta/alpha-barrel |Aldolase |NeuB-like |Capsule biosynthesis protein SiaC, N-terminal domain |Neisseria meningitidis [TaxId: 487]
d1eoka_ : (THR159) (LYS289) [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |Endo-beta-N-acetylglucosaminidase |Flavobacterium meningosepticum, endoglycosidase F3 [TaxId: 238]
d3n9ka_ : (GLU77) (ASN237) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Yeast (Candida albicans) [TaxId: 5476]
d1xwdc1 : (ASN154) (GLU259) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |Follicle-stimulating hormone receptor |Human (Homo sapiens) [TaxId: 9606]
d4epka_ : (ALA108) (ARG245) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD |Pseudomonas fluorescens [TaxId: 294]
d1de5b_ : (LYS124) (TYR287) [view usage] : c.1.15.2 |TIM beta/alpha-barrel |Xylose isomerase-like |L-rhamnose isomerase |L-rhamnose isomerase |Escherichia coli [TaxId: 562]
d4ifra_ : (ALA90) (HIS246) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD |Pseudomonas fluorescens [TaxId: 294]
d2oogd_ : (SER209) (GLU310) [view usage] : c.1.18.0 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |automated matches |automated matches |Staphylococcus aureus [TaxId: 158879]
d1h1ya_ : (TRP101) (SER223) [view usage] : c.1.2.2 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |D-ribulose-5-phosphate 3-epimerase |D-ribulose-5-phosphate 3-epimerase |Rice (Oryza sativa) [TaxId: 4530]
d3eb2d_ : (ASP115) (GLN227) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 1076]
d1wp6a2 : (HIS210) (THR356) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Bacillus sp. 707 [TaxId: 1416]
d1v5xa_ : (VAL93) (ARG200) [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |N-(5'phosphoribosyl)antranilate isomerase, PRAI |Thermus thermophilus [TaxId: 274]
d1q7ma2 : (LEU152) (VAL286) [view usage] : c.1.26.1 |TIM beta/alpha-barrel |Homocysteine S-methyltransferase |Homocysteine S-methyltransferase |Cobalamin-dependent methionine synthase MetH, N-terminal domain |Thermotoga maritima [TaxId: 2336]
d2choa2 : (ASP182) (ILE330) [view usage] : c.1.8.10 |TIM beta/alpha-barrel |(Trans)glycosidases |alpha-D-glucuronidase/Hyaluronidase catalytic domain |Glucosaminidase GH84, catalytic domain |Bacteroides thetaiotaomicron [TaxId: 818]
d3ch0a_ : (ASN149) (GLY256) [view usage] : c.1.18.0 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |automated matches |automated matches |Cytophaga hutchinsonii [TaxId: 269798]
d1sr9a2 : (ARG185) (GLY335) [view usage] : c.1.10.5 |TIM beta/alpha-barrel |Aldolase |HMGL-like |2-isopropylmalate synthase LeuA, catalytic domain |Mycobacterium tuberculosis [TaxId: 1773]
d1b5tb_ : (ASN63) (GLY202) [view usage] : c.1.23.1 |TIM beta/alpha-barrel |FAD-linked oxidoreductase |Methylenetetrahydrofolate reductase |Methylenetetrahydrofolate reductase |Escherichia coli [TaxId: 562]
d2pz0a_ : (HIS154) (ARG249) [view usage] : c.1.18.0 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |automated matches |automated matches |Thermoanaerobacter tengcongensis [TaxId: 273068]
d2c79a_ : (ALA523) (GLY654) [view usage] : c.6.2.3 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |NodB-like polysaccharide deacetylase |automated matches |Clostridium thermocellum [TaxId: 1515]
d1to3a_ : (ASN111) (GLY245) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Putative aldolase YihT |Salmonella typhimurium [TaxId: 90371]
d3o3ra_ : (LYS86) (ILE231) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1bxna1 : (SER184) (GLY324) [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Alcaligenes eutrophus [TaxId: 106590]
d1cnva_ : (LEU18) (ASP173) [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |Seed storage protein |Jack bean (Canavalia ensiformis), Concanavalin B [TaxId: 3823]
d2nxii_ : (ALA88) (GLY215) [view usage] : c.1.10.4 |TIM beta/alpha-barrel |Aldolase |Class I DAHP synthetase |3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) |Aquifex aeolicus [TaxId: 63363]
d4m81a_ : (GLU77) (ASN237) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Yeast (Candida albicans) [TaxId: 5476]
d3qkza_ : (LYS86) (ILE231) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3qvqb_ : (ALA160) (HIS249) [view usage] : c.1.18.0 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |automated matches |automated matches |Oleispira antarctica [TaxId: 188908]
d2chna2 : (ASP182) (ILE330) [view usage] : c.1.8.10 |TIM beta/alpha-barrel |(Trans)glycosidases |alpha-D-glucuronidase/Hyaluronidase catalytic domain |Glucosaminidase GH84, catalytic domain |Bacteroides thetaiotaomicron [TaxId: 818]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.10, c.6