Protein Concepts Dictionary

Tableau information

Concept source:  d1jpma1  amino acid (a.a.) range (PRO198)(LYS314)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: HEHEHEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (PRO198)  (GLY212) H1
	  (GLU216)  (GLN220) E2
	  (ASP226)  (ALA236) H3
	  (PRO240)  (ASP244) E4
	  (THR249)  (ARG260) H5
	  (ASP263)  (LEU269) E6
	  (ILE275)  (GLY289) H7
	  (GLY289)  (MET297) E8
	  (LEU302)  (LYS314) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                             
E2      170.0°   E2                                                      
H3      -22.0°  162.4°   H3                                               
E4      135.9°  -38.8°  157.8°   E4                                        
H5      -66.9°  117.9°  -45.1°  156.7°   H5                                 
E6      108.6°  -66.4°  130.4°  -27.6° -175.4°   E6                          
H7      -65.3°  121.5°  -43.5°  158.0°  -13.0° -166.3°   H7                   
E8      100.1°  -70.5°  118.5°  -45.3°  140.6°  -37.8°  152.2°   E8            
H9      -72.6°  117.2°  -56.2°  136.4°  -43.6°  137.0°  -30.8° -169.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.7°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1iwaa1 :   (TRP214)  (LEU350)   [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Galdieria partita [TaxId: 83374]
 d1hvqa_ :    (THR15)  (THR172)   [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |Hevamine A (chitinase/lysozyme) |Rubber tree (Hevea brasiliensis) [TaxId: 3981]
 d1f9ca1 :   (ARG210)  (LEU319)   [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |Muconate-lactonizing enzyme |Pseudomonas putida [TaxId: 303]
 d1eoma_ :   (THR159)  (LYS289)   [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |Endo-beta-N-acetylglucosaminidase |Flavobacterium meningosepticum, endoglycosidase F3 [TaxId: 238]
 d1tv2a_ :   (LEU240)  (THR393)   [view usage] : c.1.25.1 |TIM beta/alpha-barrel |Monomethylamine methyltransferase MtmB |Monomethylamine methyltransferase MtmB |Monomethylamine methyltransferase MtmB |Methanosarcina barkeri [TaxId: 2208]
 d1kqya_ :    (THR15)  (GLY167)   [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |Hevamine A (chitinase/lysozyme) |Rubber tree (Hevea brasiliensis) [TaxId: 3981]
 d4m0xb2 :   (LEU210)  (MET317)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Rhodococcus opacus [TaxId: 37919]
 d1h1na_ :   (ASP138)  (LEU305)   [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Endocellulase EngI |Thermoascus aurantiacus [TaxId: 5087]
 d1bd0a2 :    (LEU67)  (PRO193)   [view usage] : c.1.6.1 |TIM beta/alpha-barrel |PLP-binding barrel |Alanine racemase-like, N-terminal domain |Alanine racemase |Bacillus stearothermophilus [TaxId: 1422]
 d3pzta_ :   (LYS142)  (SER283)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
 d4hyra2 :   (HIS237)  (VAL354)   [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |automated matches |Acidaminococcus sp. [TaxId: 563191]
 d1bkha1 :   (ARG210)  (LEU319)   [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |Muconate-lactonizing enzyme |Pseudomonas putida [TaxId: 303]
 d1rqea2 :   (ASP105)  (GLY234)   [view usage] : c.1.10.5 |TIM beta/alpha-barrel |Aldolase |HMGL-like |Transcarboxylase 5S subunit, N-terminal domain |Propionibacterium freudenreichii shermanii [TaxId: 1752]
 d3my9a2 :   (ASP214)  (THR317)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Azorhizobium caulinodans [TaxId: 438753]
 d2c6qa_ :   (GLY106)  (GLY235)   [view usage] : c.1.5.0 |TIM beta/alpha-barrel |Inosine monophosphate dehydrogenase (IMPDH) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2ps2a2 :   (SER202)  (ILE315)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Aspergillus oryzae [TaxId: 510516]
 d1kr0a_ :    (THR15)  (GLY167)   [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |Hevamine A (chitinase/lysozyme) |Rubber tree (Hevea brasiliensis) [TaxId: 3981]
 d2ycix_ :    (ARG26)  (GLY152)   [view usage] : c.1.21.2 |TIM beta/alpha-barrel |Dihydropteroate synthetase-like |Methyltetrahydrofolate-utiluzing methyltransferases |automated matches |Carboxydothermus hydrogenoformans [TaxId: 246194]
 d4m0xa2 :   (TRP209)  (MET317)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Rhodococcus opacus [TaxId: 37919]
 d1xwya1 :    (GLN70)  (LEU189)   [view usage] : c.1.9.12 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |TatD Mg-dependent DNase-like |Deoxyribonuclease TatD (MttC) |Escherichia coli [TaxId: 562]
 d2ox4a2 :   (LEU220)  (ILE333)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Zymomonas mobilis [TaxId: 542]
 d3krzb_ :   (SER188)  (TYR321)   [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Thermoanaerobacter pseudethanolicus [TaxId: 340099]
 d3be7a2 :    (HIS81)  (GLY237)   [view usage] : c.1.9.18 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Zn-dependent arginine carboxypeptidase-like |Zn-dependent arginine carboxypeptidase |Unidentified organism [TaxId: 32644]
 d2psnd2 :   (PRO272)  (CYS388)   [view usage] : c.1.11.1 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |Enolase |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3fyya2 :   (ARG209)  (LEU314)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Oceanobacillus iheyensis [TaxId: 221109]
 d1h1nb_ :   (ASP138)  (LEU305)   [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Endocellulase EngI |Thermoascus aurantiacus [TaxId: 5087]
 d3gr7a_ :   (SER189)  (ASN313)   [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 1462]
 d1rpxa_ :    (PRO57)  (GLY177)   [view usage] : c.1.2.2 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |D-ribulose-5-phosphate 3-epimerase |D-ribulose-5-phosphate 3-epimerase |Potato (Solanum tuberosum) [TaxId: 4113]
 d1xsia4 :   (HIS439)  (ARG560)   [view usage] : c.1.8.13 |TIM beta/alpha-barrel |(Trans)glycosidases |YicI catalytic domain-like |Putative glucosidase YicI, domain 2 |Escherichia coli [TaxId: 562]
 d4lefb_ :    (SER97)  (GLY233)   [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Escherichia coli [TaxId: 83333]
 d4kema2 :   (LEU229)  (HIS335)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Azospirillum sp. [TaxId: 137722]
 d1of6a_ :   (SER184)  (ASN368)   [view usage] : c.1.10.4 |TIM beta/alpha-barrel |Aldolase |Class I DAHP synthetase |3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) |Baker's yeast (Saccharomyces cerevisiae), tyrosine-regulated isozyme [TaxId: 4932]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1