Protein Concepts Dictionary

Tableau information

Concept source:  d4brwa2  amino acid (a.a.) range (LYS270)(ILE387)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: HEHEHEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (LYS270)  (LYS280) H1
	  (ASN284)  (CYS290) E2
	  (SER292)  (LEU306) H3
	  (CYS310)  (ALA315) E4
	  (GLN319)  (GLN331) H5
	  (ARG335)  (SER340) E6
	  (ASN353)  (ASP359) E7
	  (ALA364)  (ARG370) H8
	  (GLY381)  (ILE387) E9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                             
E2      167.7°   E2                                                      
H3      -52.4°  139.8°   H3                                               
E4      128.7°  -39.5° -173.1°   E4                                        
H5      -35.0°  150.4°   37.3° -148.4°   H5                                 
E6      149.4°  -18.4°  158.0°  -22.5° -151.0°   E6                          
E7      173.5°  -16.9°  123.2°  -56.4°  138.5°  -34.8°   E7                   
H8      -32.9°  154.8°  -37.2°  138.8°  -49.9°  157.3°  147.4°   H8            
E9      160.3°  -29.7°  111.4°  -68.9°  125.5°  -46.7°  -13.4°  141.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1oywa3 :   (PRO223)  (PHE339)   [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |RecQ helicase domain |Escherichia coli [TaxId: 562]
 d1m6na4 :   (MET411)  (SER540)   [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Translocation ATPase SecA, nucleotide-binding domains |Bacillus subtilis [TaxId: 1423]
 d2hjva_ :   (LYS227)  (PHE343)   [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
 d2kbfa_ :   (ASP319)  (PHE439)   [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1s2ma2 :   (LYS270)  (ASN388)   [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Putative ATP-dependent RNA helicase DHH1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d4brwa2 :   (LYS270)  (ILE387)   [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
 d2fzla1 :   (SER333)  (SER452)   [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |DNA repair protein RAD25 |Archaeoglobus fulgidus [TaxId: 2234]
 d1xtia2 :   (LYS270)  (VAL391)   [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Spliceosome RNA helicase BAT1 (UAP56) |Human (Homo sapiens) [TaxId: 9606]
 d2fwra1 :   (LYS334)  (ARG453)   [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |DNA repair protein RAD25 |Archaeoglobus fulgidus [TaxId: 2234]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.37