Protein Concepts Dictionary

Tableau information

Concept source:  d4p0ub_  amino acid (a.a.) range (ALA86)(GLU190)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: HEEHHHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ALA86)   (LEU96) H1
	   (GLN99)  (LEU109) E2
	  (GLN113)  (ARG127) E3
	  (ASP131)  (ASP141) H4
	  (ASP141)  (LYS146) H5
	  (GLY154)  (PHE159) H6
	  (ARG161)  (GLY165) E7
	  (SER166)  (GLY172) H8
	  (VAL176)  (GLU190) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                             
E2     -107.8°   E2                                                      
E3      -77.1°  163.2°   E3                                               
H4      138.5°   33.1°  135.6°   H4                                        
H5       78.9°   52.5° -143.5°  -79.4°   H5                                 
H6      -30.4° -134.0°   56.4° -167.2°  -89.9°   H6                          
E7       82.3°  -32.2°  159.2°  -64.1°   24.2°  103.3°   E7                   
H8      157.3°   80.7° -101.0°  -56.8°   90.8°  131.0°   96.6°   H8            
H9       96.5°  -23.3°  172.4°  -51.9°   29.3°  116.1°   14.2°  -83.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4p0ua_ :    (ALA86)  (ALA187)   [view usage] : c.51.4.0 |Anticodon-binding domain-like |ITPase-like |automated matches |automated matches |Escherichia coli [TaxId: 1182738]
 d4p0ea_ :    (ASP85)  (ARG189)   [view usage] : c.51.4.0 |Anticodon-binding domain-like |ITPase-like |automated matches |automated matches |Escherichia coli [TaxId: 83333]
 d1ex2a_ :    (GLN86)  (PHE185)   [view usage] : c.51.4.2 |Anticodon-binding domain-like |ITPase-like |Maf-like |Maf protein |Bacillus subtilis [TaxId: 1423]
 d4oo0a_ :   (ASP109)  (ARG212)   [view usage] : c.51.4.0 |Anticodon-binding domain-like |ITPase-like |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
 d4p0eb_ :    (ASP85)  (LEU188)   [view usage] : c.51.4.0 |Anticodon-binding domain-like |ITPase-like |automated matches |automated matches |Escherichia coli [TaxId: 83333]
 d4p0ub_ :    (ALA86)  (GLU190)   [view usage] : c.51.4.0 |Anticodon-binding domain-like |ITPase-like |automated matches |automated matches |Escherichia coli [TaxId: 1182738]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.51