Protein Concepts Dictionary

Tableau information

Concept source:  d4m4yb_  amino acid (a.a.) range (ALA5)(GLY155)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: HEEHHHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ALA5)   (GLU11) H1
	   (TYR22)   (ASN28) E2
	   (GLY33)   (LYS39) E3
	   (LYS39)   (ILE56) H4
	   (LYS75)  (LEU102) H5
	  (GLU103)  (LEU126) H6
	  (ASN129)  (GLY134) E7
	  (GLY136)  (HIS142) E8
	  (ASN146)  (GLY155) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                             
E2       18.3°   E2                                                      
E3      153.1°  143.1°   E3                                               
H4     -146.7° -162.0°  -54.9°   H4                                        
H5       31.6°  -19.9°  124.2°  172.8°   H5                                 
H6       47.9°  -34.0°  109.2°  164.0°   16.4°   H6                          
E7      105.0°  121.7°  -93.7°  -41.7°  135.5° -151.3°   E7                   
E8       48.9°  -32.5°  111.1°  164.4°   19.6°    9.0°  153.9°   E8            
H9      151.8°  158.4°  -26.0°   36.5°  139.4°  128.3°  -69.4°  132.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3gbmb_ :     (ALA5)  (ASN154)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza A virus, different strains [TaxId: 11320]
 d3ubef_ :     (ALA5)  (GLY155)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |automated matches |Influenza A virus [TaxId: 641501]
 d3lzgj_ :     (ALA5)  (GLY155)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |automated matches |Influenza A virus [TaxId: 641501]
 d4kdmb_ :   (ALA339)  (GLY489)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza A virus, different strains [TaxId: 11320]
 d4uo4b_ :     (ALA5)  (GLY155)   [view usage] : h.3.1.0 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |automated matches |automated matches |Influenza A virus [TaxId: 11320]
 d4jtxd_ :     (ALA5)  (GLY155)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza A virus, different strains [TaxId: 11320]
 d4uoab_ :     (ALA5)  (GLY155)   [view usage] : h.3.1.0 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |automated matches |automated matches |Influenza a virus (a/canine/colorado/17864/2006(h3n8)) [TaxId: 867285]
 d4bgwb_ :     (ALA5)  (GLY155)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |automated matches |Influenza virus [TaxId: 644788]
 d3s11f_ :     (ALA5)  (GLY155)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |automated matches |Influenza A virus [TaxId: 11320]
 d1jsdb_ :     (ALA5)  (GLY155)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza A virus, different strains [TaxId: 11320]
 d4unwb_ :     (ALA5)  (GLY155)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |automated matches |Influenza a virus (a/eq/newmarket/93/(h3n8)) [TaxId: 159470]
 d2fk0b1 :     (ALA5)  (GLY155)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza A virus, different strains [TaxId: 11320]
 d4m4yb_ :     (ALA5)  (GLY155)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |automated matches |Influenza A virus [TaxId: 641501]
 d4uo0b_ :     (ALA5)  (GLY155)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |automated matches |Influenza a virus (a/equine/richmond/1/2007)(h3n8)) [TaxId: 560387]
 d1mqlb_ :     (GLY4)  (GLY155)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza A virus, different strains [TaxId: 11320]
 d3eyjb_ :     (GLY4)  (GLY155)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |automated matches |Influenza A virus [TaxId: 11320]
 d3znkb_ :     (ALA5)  (GLY155)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |automated matches |Influenza a virus [TaxId: 644788]
 d2wrhi_ :   (ALA505)  (GLY655)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |automated matches |Influenza a virus (a/mallard/alberta/35/1976(h1n1)) [TaxId: 352520]
 d4cyvb_ :     (ALA5)  (ASN154)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |automated matches |Influenza a virus (a/mallard/sweden/51/2002 (h10n2)) [TaxId: 757360]
 d3sdyb_ :     (GLY4)  (GLY155)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza A virus, different strains [TaxId: 11320]
 d4jtxj_ :     (ALA5)  (GLY155)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza A virus, different strains [TaxId: 11320]
 d4uo1d_ :     (ALA5)  (GLY155)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |automated matches |Influenza a virus (a/equine/richmond/1/2007)(h3n8)) [TaxId: 560387]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   h.3