Protein Concepts Dictionary

Tableau information

Concept source:  d2r90a_  amino acid (a.a.) range (THR45)(TRP166)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: HEEHEHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (THR45)   (GLY65) H1
	   (ASN72)   (GLU77) E2
	   (GLY79)   (ARG85) E3
	   (PRO96)  (SER102) H4
	  (SER102)  (MET108) E5
	  (PRO118)  (GLY135) H6
	  (ASN140)  (GLY145) E7
	  (GLY145)  (GLN150) H8
	  (ASP157)  (TRP166) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                             
E2      143.1°   E2                                                      
E3      -26.1°  161.0°   E3                                               
H4     -133.8°   82.9° -109.0°   H4                                        
E5      124.2°  -28.3°  133.2°  -94.4°   E5                                 
H6      -65.9°  150.7°  -46.4°   69.3°  157.0°   H6                          
E7       81.9°  -62.7°   99.9° -138.1°  -44.2°  146.3°   E7                   
H8       10.4° -140.0°   33.8°  136.4° -127.0°   67.2°  -83.0°   H8            
H9     -102.5°  109.0°  -89.7°   46.8°  133.2°  -44.4° -164.1°  -98.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1ycka1 :    (PRO49)  (ILE166)   [view usage] : d.118.1.1 |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |Peptidoglycan recognition protein, PGRP-S |Human (Homo sapiens) [TaxId: 9606]
 d2cb3c_ :   (ARG215)  (TRP334)   [view usage] : d.118.1.1 |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
 d1lbaa_ :    (ILE32)  (ASN142)   [view usage] : d.118.1.1 |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |Bacteriophage T7 lysozyme (Zn amidase) |Bacteriophage T7 [TaxId: 10760]
 d2r90a_ :    (THR45)  (TRP166)   [view usage] : d.118.1.1 |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |automated matches |Camel (Camelus dromedarius) [TaxId: 9838]
 d1z6ia1 :   (THR392)  (PHE513)   [view usage] : d.118.1.1 |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |Peptidoglycan-recognition protein-LC |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
 d2eava_ :   (SER249)  (TRP368)   [view usage] : d.118.1.1 |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2cb3b_ :   (ARG215)  (TRP334)   [view usage] : d.118.1.1 |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
 d2cb3a1 :   (ARG215)  (TRP334)   [view usage] : d.118.1.1 |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |Peptidoglycan-recognition protein-LE |Fruit fly (Drosophila melanogaster) [TaxId: 7227]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.118