Protein Concepts Dictionary

Tableau information

Concept source:  d2d16b_  amino acid (a.a.) range (SER25)(GLY135)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: HEEHEHEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (SER25)   (VAL40) H1
	   (PHE45)   (ASN50) E2
	   (GLN55)   (GLY61) E3
	   (PRO64)   (GLY78) H4
	   (HIS81)   (MET87) E5
	   (LEU96)  (HIS102) H6
	  (ALA106)  (GLY110) E7
	  (PRO115)  (GLU124) E8
	  (GLY126)  (GLY135) E9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                             
E2      160.3°   E2                                                      
E3      -23.2°  164.6°   E3                                               
H4      136.3°  -26.2°  157.0°   H4                                        
E5      -28.3°  165.8°  -29.4°  147.8°   E5                                 
H6      146.4°  -31.7°  133.4°  -53.3°  158.9°   H6                          
E7      -56.0°  124.8°  -70.3°  106.2°  -42.9°  156.1°   E7                   
E8      165.1°   13.8°  153.3°  -39.7° -165.4°   20.8°  135.5°   E8            
E9      -23.5°  146.3°  -44.5°  120.3°   31.2° -160.9°   35.1°  160.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2gl0a_ :    (PHE28)  (GLY140)   [view usage] : d.256.1.0 |Ta1353-like |Ta1353-like |automated matches |automated matches |Pyrobaculum aerophilum [TaxId: 178306]
 d2d16a_ :    (PHE24)  (GLY135)   [view usage] : d.256.1.0 |Ta1353-like |Ta1353-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
 d2gl0c_ :    (PHE28)  (GLY140)   [view usage] : d.256.1.0 |Ta1353-like |Ta1353-like |automated matches |automated matches |Pyrobaculum aerophilum [TaxId: 178306]
 d1vgga_ :    (VAL27)  (ILE129)   [view usage] : d.256.1.1 |Ta1353-like |Ta1353-like |Ta1353-like |Hypothetical protein TT1634 (TTHA1091) |Thermus thermophilus [TaxId: 274]
 d2d16b_ :    (SER25)  (GLY135)   [view usage] : d.256.1.0 |Ta1353-like |Ta1353-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
 d2ekma_ :    (VAL29)  (VAL130)   [view usage] : d.256.1.0 |Ta1353-like |Ta1353-like |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 111955]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.256