Protein Concepts Dictionary

Tableau information

Concept source:  d1q5xb_  amino acid (a.a.) range (THR5)(GLY94)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: HEEEEHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (THR5)   (ILE11) H1
	   (ASP15)   (GLU20) E2
	   (LEU22)   (GLY28) E3
	   (ALA30)   (GLY34) E4
	   (ILE37)   (CYS41) E5
	   (ASN45)   (GLN54) H6
	   (GLY58)   (ASP64) E7
	   (ASP75)   (GLU86) H8
	   (GLU88)   (GLY94) E9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                             
E2     -140.5°   E2                                                      
E3      127.1°   92.3°   E3                                               
E4       46.4°  137.8°   96.7°   E4                                        
E5     -116.1°   31.0°  111.1° -109.0°   E5                                 
H6       79.7° -138.1°  -50.4°   73.6°  161.0°   H6                          
E7      -92.2°   50.7°  135.6°  -97.9°  -24.8°  170.9°   E7                   
H8       58.7° -160.1°  -69.2°   55.3°  163.4°   22.0°  149.0°   H8            
E9      -91.9°   49.8°  138.0° -101.6°  -27.0°  171.5°   -5.5°  150.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1q5xa_ :     (THR5)   (GLY94)   [view usage] : c.8.7.1 |The "swivelling" beta/beta/alpha domain |RraA-like |RraA-like |Regulator of RNase E activity RraA (MenG) |Escherichia coli [TaxId: 562]
 d1q5xb_ :     (THR5)   (GLY94)   [view usage] : c.8.7.1 |The "swivelling" beta/beta/alpha domain |RraA-like |RraA-like |Regulator of RNase E activity RraA (MenG) |Escherichia coli [TaxId: 562]
 d1nxjb_ :     (THR8)   (HIS96)   [view usage] : c.8.7.1 |The "swivelling" beta/beta/alpha domain |RraA-like |RraA-like |Hypothetical protein Rv3853 |Mycobacterium tuberculosis [TaxId: 1773]
 d3c8ob_ :     (THR5)   (GLY94)   [view usage] : c.8.7.0 |The "swivelling" beta/beta/alpha domain |RraA-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
 d1vi4a_ :     (THR6)   (GLY95)   [view usage] : c.8.7.1 |The "swivelling" beta/beta/alpha domain |RraA-like |RraA-like |Hypothetical protein VC2366 |Vibrio cholerae [TaxId: 666]
 d1q5xc_ :     (THR5)   (GLY94)   [view usage] : c.8.7.1 |The "swivelling" beta/beta/alpha domain |RraA-like |RraA-like |Regulator of RNase E activity RraA (MenG) |Escherichia coli [TaxId: 562]
 d3c8oa_ :     (THR5)   (GLY94)   [view usage] : c.8.7.0 |The "swivelling" beta/beta/alpha domain |RraA-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
 d1nxjc_ :     (THR8)   (HIS96)   [view usage] : c.8.7.1 |The "swivelling" beta/beta/alpha domain |RraA-like |RraA-like |Hypothetical protein Rv3853 |Mycobacterium tuberculosis [TaxId: 1773]
 d1nxja_ :     (THR8)   (HIS96)   [view usage] : c.8.7.1 |The "swivelling" beta/beta/alpha domain |RraA-like |RraA-like |Hypothetical protein Rv3853 |Mycobacterium tuberculosis [TaxId: 1773]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.8