Protein Concepts Dictionary

Tableau information

Concept source:  d1kfva2  amino acid (a.a.) range (PHE37)(LYS130)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: HEEEEEEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (PHE37)   (GLU43) H1
	   (GLY46)   (GLY56) E2
	   (LYS57)   (ILE63) E3
	   (ASP66)   (MSE75) E4
	   (MSE75)   (LEU81) E5
	   (HIS93)   (ALA99) E6
	  (LEU103)  (ARG109) E7
	  (PHE111)  (LEU116) E8
	  (SER118)  (LYS130) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                             
E2      124.1°   E2                                                      
E3       42.7°  158.5°   E3                                               
E4     -133.4°  -50.9°  149.7°   E4                                        
E5      -26.6° -143.3°   35.4° -123.2°   E5                                 
E6       -7.8° -131.8°   36.2° -135.2°  -20.1°   E6                          
E7      167.3°   44.4° -149.9°   38.1°  157.4° -172.9°   E7                   
E8       44.0°  125.8°  -33.1°  175.2°  -56.7°   43.1° -143.3°   E8            
H9     -143.5°  -21.2°  170.8°  -36.2° -153.9° -150.8°   24.1°  141.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.4°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1nnja2 :    (PHE37)  (VAL122)   [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |DNA repair protein MutM (Fpg) |Lactococcus lactis [TaxId: 1358]
 d1pjia2 :    (PHE37)  (VAL122)   [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |DNA repair protein MutM (Fpg) |Lactococcus lactis [TaxId: 1358]
 d4g4ra1 :    (ASP39)  (LEU134)   [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |DNA repair protein MutM (Fpg) |Bacillus stearothermophilus [TaxId: 1422]
 d1kfva2 :    (PHE37)  (LYS130)   [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |DNA repair protein MutM (Fpg) |Lactococcus lactis [TaxId: 1358]
 d1k82a2 :    (GLU38)  (LEU128)   [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |DNA repair protein MutM (Fpg) |Escherichia coli [TaxId: 562]
 d4cisa1 :    (PHE37)  (LYS130)   [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |automated matches |Lactococcus lactis [TaxId: 1359]
 d4g4qa1 :    (SER40)  (ARG127)   [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |DNA repair protein MutM (Fpg) |Bacillus stearothermophilus [TaxId: 1422]
 d3sasa1 :    (SER40)  (ARG127)   [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |DNA repair protein MutM (Fpg) |Bacillus stearothermophilus [TaxId: 1422]
 d1tdza2 :    (PHE37)  (VAL122)   [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |DNA repair protein MutM (Fpg) |Lactococcus lactis [TaxId: 1358]
 d4g4oa1 :    (ASP39)  (LEU134)   [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |DNA repair protein MutM (Fpg) |Bacillus stearothermophilus [TaxId: 1422]
 d1l1ta2 :    (ASP39)  (ARG127)   [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |DNA repair protein MutM (Fpg) |Bacillus stearothermophilus [TaxId: 1422]
 d4g4na1 :    (ASP39)  (LEU134)   [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |DNA repair protein MutM (Fpg) |Bacillus stearothermophilus [TaxId: 1422]
 d1r2ya2 :    (SER40)  (ARG127)   [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |DNA repair protein MutM (Fpg) |Bacillus stearothermophilus [TaxId: 1422]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 b.113