Protein Concepts Dictionary

Tableau information

Concept source:  d4pkva1  amino acid (a.a.) range (ARG465)(LYS548)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: HEEEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ARG465)  (LYS473) H1
	  (LYS476)  (ASN482) E2
	  (ASN482)  (ASP487) E3
	  (ARG498)  (PRO507) E4
	  (ARG510)  (GLU515) E5
	  (GLY517)  (GLN522) E6
	  (ILE525)  (ILE529) E7
	  (GLN533)  (SER538) E8
	  (TYR542)  (LYS548) E9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                             
E2       75.4°   E2                                                      
E3     -126.3° -100.9°   E3                                               
E4      -23.8°  -80.0° -102.5°   E4                                        
E5      138.8°   68.0°  -48.0° -126.8°   E5                                 
E6       44.9°  -90.6°  163.2°   67.1°  148.8°   E6                          
E7     -130.4°  153.7°   61.8°  121.4°  -86.1° -111.1°   E7                   
E8      133.4°   67.1°   42.8°  119.3°   -8.2° -153.6°   87.9°   E8            
E9      -10.6°  -80.6° -116.5°  -14.3° -137.7°   52.9°  124.1°  131.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.0°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1yqya2 :   (ASN464)  (LYS548)   [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |Anthrax toxin lethal factor, middle domain |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
 d2j3va2 :   (LYS326)  (ALA423)   [view usage] : d.166.1.0 |ADP-ribosylation |ADP-ribosylation |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
 d2j3xa2 :   (LYS326)  (ALA423)   [view usage] : d.166.1.0 |ADP-ribosylation |ADP-ribosylation |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
 d2j3zc2 :   (ASP325)  (ALA423)   [view usage] : d.166.1.0 |ADP-ribosylation |ADP-ribosylation |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
 d1jkya3 :   (ASN464)  (VAL549)   [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |Anthrax toxin lethal factor, middle domain |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
 d4pkqa1 :   (ARG465)  (LYS548)   [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
 d4pkva1 :   (ARG465)  (LYS548)   [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.166