Protein Concepts Dictionary

Tableau information

Concept source:  d1f5sa_  amino acid (a.a.) range (LYS4)(LYS112)

nSSEs in this Concept: 9

String of secondary struct.elems. (SSEs) defining this concept: EHHHHHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (LYS4)   (PHE10) E1
	   (PHE12)   (ASN18) H2
	   (GLU20)   (GLY30) H3
	   (GLU33)   (GLY45) H4
	   (ASN48)   (LYS61) H5
	   (ILE65)   (LYS73) H6
	   (GLY80)   (GLY92) H7
	   (VAL94)  (GLY100) E8
	  (PHE102)  (LYS112) H9

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                             
H2      -96.0°   H2                                                      
H3      -24.7°  -87.2°   H3                                               
H4     -143.1° -108.4°  163.6°   H4                                        
H5       49.2°   66.0°   26.8° -167.5°   H5                                 
H6      119.1°  -57.0°  130.7°  -59.3°  120.2°   H6                          
H7     -158.6° -103.0° -145.9°   36.8° -131.7°  -80.0°   H7                   
E8      -25.0° -121.0°  -41.4°  122.7°   68.2°  128.9°  135.4°   E8            
H9      138.8°   43.3°  128.6°  -67.7°  103.4°  -41.0°  -61.7°  162.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.5°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1l7pb_ :   (LYS506)  (LYS612)   [view usage] : c.108.1.4 |HAD-like |HAD-like |Phosphoserine phosphatase |Phosphoserine phosphatase |Methanococcus jannaschii [TaxId: 2190]
 d1rkua_ :     (MET1)   (SER97)   [view usage] : c.108.1.11 |HAD-like |HAD-like |Homoserine kinase ThrH |Homoserine kinase ThrH |Pseudomonas aeruginosa [TaxId: 287]
 d1l7ma_ :     (LYS5)  (LYS112)   [view usage] : c.108.1.4 |HAD-like |HAD-like |Phosphoserine phosphatase |Phosphoserine phosphatase |Methanococcus jannaschii [TaxId: 2190]
 d1f5sa_ :     (LYS4)  (LYS112)   [view usage] : c.108.1.4 |HAD-like |HAD-like |Phosphoserine phosphatase |Phosphoserine phosphatase |Methanococcus jannaschii [TaxId: 2190]
 d3m1yb_ :     (LYS3)  (LEU109)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Helicobacter pylori [TaxId: 210]
 d1l7ob_ :   (LYS504)  (LYS612)   [view usage] : c.108.1.4 |HAD-like |HAD-like |Phosphoserine phosphatase |Phosphoserine phosphatase |Methanococcus jannaschii [TaxId: 2190]
 d2feab_ :     (LYS5)  (GLU111)   [view usage] : c.108.1.20 |HAD-like |HAD-like |MtnX-like |2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX |Bacillus subtilis [TaxId: 1423]
 d1f5sb_ :   (LYS505)  (LYS612)   [view usage] : c.108.1.4 |HAD-like |HAD-like |Phosphoserine phosphatase |Phosphoserine phosphatase |Methanococcus jannaschii [TaxId: 2190]
 d1y8aa1 :     (MET1)  (GLY118)   [view usage] : c.108.1.24 |HAD-like |HAD-like |AF1437-like |Hypothetical protein AF1437 |Archaeoglobus fulgidus [TaxId: 2234]
 d1l7mb_ :   (LYS504)  (LYS612)   [view usage] : c.108.1.4 |HAD-like |HAD-like |Phosphoserine phosphatase |Phosphoserine phosphatase |Methanococcus jannaschii [TaxId: 2190]
 d2feaa1 :     (LYS5)  (LEU110)   [view usage] : c.108.1.20 |HAD-like |HAD-like |MtnX-like |2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX |Bacillus subtilis [TaxId: 1423]
 d1l8lb_ :    (ASP15)  (ASN124)   [view usage] : c.108.1.4 |HAD-like |HAD-like |Phosphoserine phosphatase |Phosphoserine phosphatase |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 c.108